EY728556

Overview
NameEY728556
Unique NameEY728556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP4M1_MOUSE (AP-4 complex subunit mu-1 OS=Mus musculus GN=Ap4m1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.188e-25
Identity = 74/231 (32.03%), Postives = 132/231 (57.14%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRS-PFS-----------SKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGV--NLPFRVLPTIK-ELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPK 663
            E++D+GY Q  S E+L+ +I  E V S PFS           ++     V  ++      +  R +    +KNEVFLD+VE +++L++S GS+L+ DV G+I +K FL    ++ +GL ++  + K S+L+      G  I +D+V+FH  VNL  F S + +   PP GE  +M+Y++++ +   LPFR+ P+++ + G  R++V +K++     K  AL + + +P+P+
Sbjct:  115 EVLDYGYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQNKVAPSSAASRPVLSSRSDQS--QKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEICIGLTEEFCVGK-SELRG----YGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDQGSGRLQVYLKLRCDLPPKSQALNIHLHLPLPR 338          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP4M_DICDI (AP-4 complex subunit mu OS=Dictyostelium discoideum GN=apm4 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.319e-22
Identity = 59/176 (33.52%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  196 NEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLE--------KESQLK----------SRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQT 669
            NE+++D+ E + +L SS G++LR ++TGKI MK +L G P L LGL+ +   +         E+++           S P+ +  +  +DD +FH+C   + F    T++F PP G+F L+KYRI+     PF V   ++   R R ++ V I+S F  K+    + + IPVPK T
Sbjct:  228 NEIYIDLCERLTVLYSSNGTILRNEITGKIQMKSYLRGNPALSLGLSPEFTFKTIANRDESNENEIDNNNIGGVSNLSAPSSNTTSFIVDDCSFHECAG-SGFQPNNTINFKPPQGDFTLLKYRISNNNYTPFLVKTNLESTIRNRFDLVVTIRSNFSNKVVPNFIFVSIPVPKST 402          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP3M1_CHICK (AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.920e-20
Identity = 75/258 (29.07%), Postives = 118/258 (45.74%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYIT-----QEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLG-LNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEG--VNLPFRV--LPTIKELGRT-RMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKIS 756
            E++D G+P      ILK  I      +  V S   S      +P   L     + WRR G+ Y  NE + D++E ++ ++   GS +  ++ G I     LSGMPDL L  +N ++                    LDDV+FH C+   R+ SE+ +SF+PPDG F L+ YR++    V +P  V  L + KE   + R +V +  K   G  +   GVV+ + +PK     +   T G   ++     L  +  KI+
Sbjct:  115 EMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLS---NIPWRRAGVKYTNNEAYFDVIEEIDAIIDKSGSTVFAEIQGVIDSCIKLSGMPDLSLSFMNPRL--------------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHLISFKENSSSGRFDVTIGPKQNMGKTV--EGVVMTVHMPKAVLNMNLTATQGSYTFDPVTKVLAWDVGKIT 347          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP3M1_BOVIN (AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.920e-20
Identity = 72/258 (27.91%), Postives = 116/258 (44.96%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYIT-----QEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLG-LNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEG--VNLPFRVLPTI---KELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKIS 756
            E++D G+P      ILK  I      + GV S   S      +P   L     + WRR G+ Y  NE + D+VE ++ ++   GS +  ++ G I     LSGMPDL L  +N ++                    LDDV+FH C+   R+ SE+ +SF+PPDG F L+ YR++    V +P  V  +I   +     R ++ +  K   G  +   G+ + + +PK     +   T G   ++     L  +  KI+
Sbjct:  115 EMLDNGFPLATESNILKELIKPPTILRSGVNSITGSSNVGDTLPTGQLS---NIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKIT 347          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP3M2_MOUSE (AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.651e-19
Identity = 77/263 (29.28%), Postives = 117/263 (44.49%), Query Frame = 1
Query:    7 VRAEIMDFGYPQNLSPEILKLYIT-----QEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLG-LNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEG--VNLPFRVLPTI-----KELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKIS 756
            V  E++D G+P      ILK  I      +  V +   S      +P   L V   V WRR G+ Y  NE + D+VE ++ ++   GS +  ++ G I     L+GMPDL L  +N ++                    LDDV+FH CV   R+ SE+ +SF+PPDG F L+ Y ++    V +P  V  +I       LG  R E+ V  K   G  +   GV++   +PK     S   + G   ++     L  +  KI+
Sbjct:  112 VLEEMLDNGFPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSV---VPWRRTGVKYTNNEAYFDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDLTLSFMNPRL--------------------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLAYHVSAQNLVAIPVYVKHSISFRDSSSLG--RFEITVGPKQTMGKTI--EGVIVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKIN 347          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP3M1_PONAB (AP-3 complex subunit mu-1 OS=Pongo abelii GN=AP3M1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.651e-19
Identity = 71/258 (27.52%), Postives = 115/258 (44.57%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYIT-----QEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLG-LNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEG--VNLPFRVLPTI---KELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKIS 756
            E++D G+P      ILK  I      +  V S   S      +P   L     + WRR G+ Y  NE + D+VE ++ ++   GS +  ++ G I     LSGMPDL L  +N ++                    LDDV+FH C+   R+ SE+ +SF+PPDG F L+ YR++    V +P  V  +I   +     R ++ +  K   G  +   G+ + + +PK     +   T G   ++     L  +  KI+
Sbjct:  115 EMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLS---NIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKIT 347          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP3M1_MOUSE (AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.651e-19
Identity = 71/258 (27.52%), Postives = 115/258 (44.57%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYIT-----QEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLG-LNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEG--VNLPFRVLPTI---KELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKIS 756
            E++D G+P      ILK  I      +  V S   S      +P   L     + WRR G+ Y  NE + D+VE ++ ++   GS +  ++ G I     LSGMPDL L  +N ++                    LDDV+FH C+   R+ SE+ +SF+PPDG F L+ YR++    V +P  V  +I   +     R ++ +  K   G  +   G+ + + +PK     +   T G   ++     L  +  KI+
Sbjct:  115 EMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLS---NIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLAWDVGKIT 347          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP3M1_HUMAN (AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.651e-19
Identity = 71/258 (27.52%), Postives = 115/258 (44.57%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYIT-----QEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLG-LNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEG--VNLPFRVLPTI---KELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKIS 756
            E++D G+P      ILK  I      +  V S   S      +P   L     + WRR G+ Y  NE + D+VE ++ ++   GS +  ++ G I     LSGMPDL L  +N ++                    LDDV+FH C+   R+ SE+ +SF+PPDG F L+ YR++    V +P  V  +I   +     R ++ +  K   G  +   G+ + + +PK     +   T G   ++     L  +  KI+
Sbjct:  115 EMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLS---NIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKIT 347          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP3M1_RAT (AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=Ap3m1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.992e-19
Identity = 71/258 (27.52%), Postives = 114/258 (44.19%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYIT-----QEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLG-LNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEG--VNLPFRVLPTI---KELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKIS 756
            E++D G+P      ILK  I      +  V S   S      +P   L     + WRR G+ Y  NE + D+VE ++ ++   GS +  ++ G I     LSGMPDL L  +N ++                    LDDV+FH C+   R+ SE+ +SF+PPDG F L+ YR++    V +P  V   I   +     R ++ +  K   G  +   G+ + + +PK     +   T G   ++     L  +  KI+
Sbjct:  115 EMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLS---NIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHNISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLAWDVGKIT 347          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP3M2_RAT (AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=Ap3m2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.305e-18
Identity = 77/263 (29.28%), Postives = 116/263 (44.11%), Query Frame = 1
Query:    7 VRAEIMDFGYPQNLSPEILKLYIT-----QEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLG-LNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEG--VNLPFRVLPTIK-----ELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKIS 756
            V  E++D G+P      ILK  I      +  V +   S      +P   L V   V WRR G+ Y  NE + D+VE ++ ++   GS +  ++ G I     L+GMPDL L  +N ++                    LDDV+FH CV   R+ SE+ +SF+PPDG F L+ Y ++    V +P  V  +I       LG  R E+ V  K   G  +   GV +   +PK     S   + G   ++     L  +  KI+
Sbjct:  112 VLEEMLDNGFPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSV---VPWRRTGVKYTNNEAYFDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDLTLSFMNPRL--------------------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKHSISFRDSGSLG--RFEITVGPKQTMGKTI--EGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKIN 347          
The following BLAST results are available for this feature:
BLAST of EY728556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
AP4M1_MOUSE4.188e-2532.03AP-4 complex subunit mu-1 OS=Mus musculus GN=Ap4m1... [more]
AP4M_DICDI3.319e-2233.52AP-4 complex subunit mu OS=Dictyostelium discoideu... [more]
AP3M1_CHICK6.920e-2029.07AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M... [more]
AP3M1_BOVIN6.920e-2027.91AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 P... [more]
AP3M2_MOUSE7.651e-1929.28AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2... [more]
AP3M1_PONAB7.651e-1927.52AP-3 complex subunit mu-1 OS=Pongo abelii GN=AP3M1... [more]
AP3M1_MOUSE7.651e-1927.52AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1... [more]
AP3M1_HUMAN7.651e-1927.52AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1... [more]
AP3M1_RAT9.992e-1927.52AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP3M2_RAT1.305e-1829.28AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728556 ID=EY728556; Name=EY728556; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGTGCAGAAATCATGGACTTTGGTTACCCGCAGAATCTCTC
TCCTGAGATTTTAAAGCTTTATATCACTCAAGAAGGGGTGCGGTCACCAT
TTTCATCCAAGCCTACAGATAGACCTGTCCCTAATGCAACTTTACAAGTT
ACGGGTGCAGTTGGTTGGCGTAGAGAGGGACTTGTTTACAAGAAAAATGA
GGTCTTTCTTGATATTGTGGAAAGTGTAAATCTTCTGATGTCTTCAAAAG
GTAGTGTTCTACGTTGTGATGTAACGGGGAAGATTCTTATGAAATGCTTC
CTCTCGGGAATGCCTGATTTGAAGTTAGGTTTAAATGACAAAATTGGCCT
TGAGAAGGAGTCACAGCTGAAATCACGTCCTACTAAGAGTGGTAAAACAA
TTGAGCTTGATGATGTTACTTTCCATCAATGCGTAAACTTGACAAGGTTT
AACTCGGAGAAGACAGTGAGTTTTGTGCCACCAGATGGTGAATTTGAATT
GATGAAGTATCGTATCACCGAGGGTGTAAATCTTCCATTCCGTGTCTTGC
CAACTATTAAGGAACTTGGTCGAACACGTATGGAAGTANATGTNAAGATA
AAGAGTGTCTTTGGTGCAAAAATGTTTGCGCTTGGGGTTGTCATCAAAAT
TCCTGTACCAAAACAGACGGCAAAGAACAGTTTCCANGTGACATCAGGGC
GGGCAAAGTACAATGCTTCAATTGATTGCTTGGTTTTGGAAGATAAAAAA
ATTTCCAGGACAACTGAGCCACCATGATTGCNAAGGTTGAGTTGATTTCA
CAATGGGCGAAAAGAAACGTGGACAAGGCACCAATCAATGGATTTCAGGT
TCCATGTTCCCGCTCCAGGTTACTGTCCGTTTCTCAGGTTGGGAGAAAAT
GGTACATACGTTGATTGGTC
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