EY728532

Overview
NameEY728532
Unique NameEY728532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length135
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728532 vs. ExPASy Swiss-Prot
Match: AROB_PSEU5 (3-dehydroquinate synthase OS=Pseudomonas stutzeri (strain A1501) GN=aroB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.965e-15
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = -1
Query:    7 QPNVVLIDTATLNTLPPRELSAGLAEVIKYGLICDEPFLTWLE 135
            QP  V+IDTATL TLP RELSAGLAEVIKYGLICDEPFLTWLE
Sbjct:  157 QPRAVVIDTATLATLPSRELSAGLAEVIKYGLICDEPFLTWLE 199          
BLAST of EY728532 vs. ExPASy Swiss-Prot
Match: AROB_AZOVD (3-dehydroquinate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=aroB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.965e-15
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = -1
Query:    1 QPNVVLIDTATLNTLPPRELSAGLAEVIKYGLICDEPFLTWLEEH 135
            QP  V+IDTATL TLP RELSAGLAEVIKYGLICDEPFL WLE H
Sbjct:  157 QPKAVVIDTATLATLPERELSAGLAEVIKYGLICDEPFLGWLETH 201          
BLAST of EY728532 vs. ExPASy Swiss-Prot
Match: AROB_PSEAE (3-dehydroquinate synthase OS=Pseudomonas aeruginosa GN=aroB PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.485e-15
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = -1
Query:    1 QPNVVLIDTATLNTLPPRELSAGLAEVIKYGLICDEPFLTWLEEH 135
            QP  V+IDTA+L TLP RELSAGLAEVIKYG ICDEPF+TWLE H
Sbjct:  157 QPQAVVIDTASLKTLPSRELSAGLAEVIKYGFICDEPFITWLEAH 201          
BLAST of EY728532 vs. ExPASy Swiss-Prot
Match: AROB_PSEE4 (3-dehydroquinate synthase OS=Pseudomonas entomophila (strain L48) GN=aroB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.469e-15
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = -1
Query:    1 QPNVVLIDTATLNTLPPRELSAGLAEVIKYGLICDEPFLTWLEEH 135
            QPN VLIDT +L TLP RELSAGLAE+IKYGLICDEPFL WLE++
Sbjct:  157 QPNAVLIDTTSLKTLPQRELSAGLAEIIKYGLICDEPFLGWLEDN 201          
BLAST of EY728532 vs. ExPASy Swiss-Prot
Match: AROB_PSEP1 (3-dehydroquinate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=aroB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.106e-14
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = -1
Query:    1 QPNVVLIDTATLNTLPPRELSAGLAEVIKYGLICDEPFLTWLEEH 135
            QPN VLIDT +L TLP RELSAGLAEVIKYGLICD+PFL WLE++
Sbjct:  157 QPNAVLIDTTSLKTLPARELSAGLAEVIKYGLICDKPFLAWLEDN 201          
BLAST of EY728532 vs. ExPASy Swiss-Prot
Match: AROB_PSEMY (3-dehydroquinate synthase OS=Pseudomonas mendocina (strain ymp) GN=aroB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.887e-14
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = -1
Query:    7 QPNVVLIDTATLNTLPPRELSAGLAEVIKYGLICDEPFLTWLE 135
            QP  VLIDTA+L+TLP RELSAGLAEVIKYGLICDEPFL WLE
Sbjct:  157 QPKAVLIDTASLDTLPARELSAGLAEVIKYGLICDEPFLGWLE 199          
BLAST of EY728532 vs. ExPASy Swiss-Prot
Match: AROB_PSEPK (3-dehydroquinate synthase OS=Pseudomonas putida (strain KT2440) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.490e-14
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = -1
Query:    1 QPNVVLIDTATLNTLPPRELSAGLAEVIKYGLICDEPFLTWLEEH 135
            QP  VLIDT +L TLP RELSAGLAEVIKYGLICD+PFL WLE++
Sbjct:  157 QPKAVLIDTTSLKTLPARELSAGLAEVIKYGLICDKPFLAWLEDN 201          
BLAST of EY728532 vs. ExPASy Swiss-Prot
Match: AROB_MARMS (3-dehydroquinate synthase OS=Marinomonas sp. (strain MWYL1) GN=aroB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.306e-12
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = -1
Query:    4 QPNVVLIDTATLNTLPPRELSAGLAEVIKYGLICDEPFLTWLEE 135
            QP  V+IDT TL +LP RELSAG+AEVIKYGLICD PF  WLE+
Sbjct:  158 QPQAVIIDTETLQSLPQRELSAGMAEVIKYGLICDVPFFDWLEQ 201          
BLAST of EY728532 vs. ExPASy Swiss-Prot
Match: AROB_DICNV (3-dehydroquinate synthase OS=Dichelobacter nodosus (strain VCS1703A) GN=aroB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.934e-12
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = -1
Query:    1 PNVVLIDTATLNTLPPRELSAGLAEVIKYGLICDEPFLTWLEEH 132
            P  VL+DTATL+TLPPRE SAGLAEVIKY LI D  FL+WLE+H
Sbjct:  160 PQAVLMDTATLSTLPPREFSAGLAEVIKYALIYDISFLSWLEQH 203          
BLAST of EY728532 vs. ExPASy Swiss-Prot
Match: AROB_THISH (3-dehydroquinate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=aroB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.138e-12
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = -1
Query:    7 QPNVVLIDTATLNTLPPRELSAGLAEVIKYGLICDEPFLTWLE 135
            QP  V+IDT TL+TLP REL AG+AEVIKYGLICD PF  WLE
Sbjct:  157 QPRCVVIDTDTLDTLPDRELRAGIAEVIKYGLICDRPFFDWLE 199          
The following BLAST results are available for this feature:
BLAST of EY728532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
AROB_PSEU54.965e-1588.373-dehydroquinate synthase OS=Pseudomonas stutzeri ... [more]
AROB_AZOVD4.965e-1584.443-dehydroquinate synthase OS=Azotobacter vinelandi... [more]
AROB_PSEAE6.485e-1580.003-dehydroquinate synthase OS=Pseudomonas aeruginos... [more]
AROB_PSEE48.469e-1580.003-dehydroquinate synthase OS=Pseudomonas entomophi... [more]
AROB_PSEP11.106e-1480.003-dehydroquinate synthase OS=Pseudomonas putida (s... [more]
AROB_PSEMY1.887e-1486.053-dehydroquinate synthase OS=Pseudomonas mendocina... [more]
AROB_PSEPK5.490e-1477.783-dehydroquinate synthase OS=Pseudomonas putida (s... [more]
AROB_MARMS2.306e-1272.733-dehydroquinate synthase OS=Marinomonas sp. (stra... [more]
AROB_DICNV3.934e-1275.003-dehydroquinate synthase OS=Dichelobacter nodosus... [more]
AROB_THISH5.138e-1274.423-dehydroquinate synthase OS=Thioalkalivibrio sp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-B06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728532 ID=EY728532; Name=EY728532; organism=Citrus sinensis; type=EST; length=135bp
ATGCTCTTCAAGCCAGGTCAGGAACGGCTCGTCGCAGATCAGGCCGTACT
TGATGACTTCCGCCAGGCCCGCCGACAGCTCGCGGGGCGGCAGGGTATTG
AGGGTGGCGGTGTCGATCAGCACCACATTCGGCTG
back to top