EY728517

Overview
NameEY728517
Unique NameEY728517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728517 vs. ExPASy Swiss-Prot
Match: ARL3_TAEGU (ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.596e-13
Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  175 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHHIARRVWKDYYAKVDAVVYLVDSYDKERFAESKRXXXXXXXXXXXXXVPFLSF 501
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG    R  W++Y+   D ++Y++DS D++RF E+ +             VP L F
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIF 124          
BLAST of EY728517 vs. ExPASy Swiss-Prot
Match: ARL3_PIG (ADP-ribosylation factor-like protein 3 OS=Sus scrofa GN=ARL3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.596e-13
Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  175 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHHIARRVWKDYYAKVDAVVYLVDSYDKERFAESKRXXXXXXXXXXXXXVPFLSF 501
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG    R  W++Y+   D ++Y++DS D++RF E+ +             VP L F
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIF 124          
BLAST of EY728517 vs. ExPASy Swiss-Prot
Match: ARL3_BOVIN (ADP-ribosylation factor-like protein 3 OS=Bos taurus GN=ARL3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.596e-13
Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  175 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHHIARRVWKDYYAKVDAVVYLVDSYDKERFAESKRXXXXXXXXXXXXXVPFLSF 501
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG    R  W++Y+   D ++Y++DS D++RF E+ +             VP L F
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIF 124          
BLAST of EY728517 vs. ExPASy Swiss-Prot
Match: ARL3_RAT (ADP-ribosylation factor-like protein 3 OS=Rattus norvegicus GN=Arl3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  175 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHHIARRVWKDYYAKVDAVVYLVDSYDKERFAESKRXXXXXXXXXXXXXVPFLSF 501
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG    R  W+ Y+   D ++Y++DS D++RF E+ +             VP L F
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVF 124          
BLAST of EY728517 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  175 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHHIARRVWKDYYAKVDAVVYLVDSYDKERFAESKRXXXXXXXXXXXXXVPFLSF 501
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG    R  W+ Y+   D ++Y++DS D++RF E+ +             VP L F
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 124          
BLAST of EY728517 vs. ExPASy Swiss-Prot
Match: ARL3_DANRE (ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  175 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHHIARRVWKDYYAKVDAVVYLVDSYDKERFAESKRXXXXXXXXXXXXXVPFLSF 501
            +E +IL LGLDN GKTTLL  L  E +    PTQ    + +     K   +D+GG    R  W++Y+   D ++Y++DS D++RF E+ +             VP L F
Sbjct:   16 QEVRILLLGLDNGGKTTLLKQLASEDITHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLVF 124          
BLAST of EY728517 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  139 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHHIARRVWKDYYAKVDAVVYLVDSYDKERFAESK 441
            F+  + SL   +KE +IL +GLD AGK+TLL+ LK   +V   PT     E +    +    +D+GG H  R +WK YY   +AV+++VDS D+ER  E K
Sbjct:   12 FFSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVK 112          
BLAST of EY728517 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1
Query:  175 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS-IGKIKFKAFDLGGHHIARRVWKDYYAKVDAVVYLVDSYDKERFAESKRXXXXXXXXXXXXXVPFLSF 501
            +E +IL LGLDNAGKTT+L  L  E +    PT+    + ++ +G I+   +D+GG    R  W +YY  +D +++++DS DK+RF E                VP L F
Sbjct:   16 REIRILLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIF 125          
BLAST of EY728517 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  178 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHHIARRVWKDYYAKVDAVVYLVDSYDKERFAES 438
            E +++ LGLD AGKTT+L  LK +  +Q  PT     E +    +KF  +D+GG H  R +WK YY    AVV++VDS  ++R +E+
Sbjct:  404 EIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEA 490          
BLAST of EY728517 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  178 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHHIARRVWKDYYAKVDAVVYLVDSYDKERFAES 438
            E +++ LGLD AGKTT+L  LK +  +Q  PT     E +    +KF  +D+GG H  R +WK YY    AVV++VDS  ++R +E+
Sbjct:  404 EIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEA 490          
The following BLAST results are available for this feature:
BLAST of EY728517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
ARL3_TAEGU3.596e-1335.78ADP-ribosylation factor-like protein 3 OS=Taeniopy... [more]
ARL3_PIG3.596e-1335.78ADP-ribosylation factor-like protein 3 OS=Sus scro... [more]
ARL3_BOVIN3.596e-1335.78ADP-ribosylation factor-like protein 3 OS=Bos taur... [more]
ARL3_RAT4.696e-1335.78ADP-ribosylation factor-like protein 3 OS=Rattus n... [more]
ARL3_MOUSE4.696e-1335.78ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL3_DANRE4.696e-1334.86ADP-ribosylation factor-like protein 3 OS=Danio re... [more]
ARFJ_DICDI4.696e-1340.59ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARL3_CAEEL1.046e-1235.45ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]
ARD1_MOUSE1.046e-1241.38GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN1.046e-1241.38GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-A02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728517 ID=EY728517; Name=EY728517; organism=Citrus sinensis; type=EST; length=902bp
CACGCGTCCGATCACGCACTCGTTGATTCCTCCTAATTATCTCAAAGATT
CATCATATTTGAGCCAAAATTCGATCTTTTTGATAGATTCATTATAAATA
AGGAGTAATAAAAGAAACCCATGTTTTTGTTTGATTGGTTTTATGGGATT
CTTGCATCTCTTGGGCTCTGGCAAAAAGAGGCCAAGATCTTGTTTCTCGG
CCTCGATAATGCCGGTAAAACGACGCTGCTTCATATGTTGAAAGATGAGA
GATTAGTTCAACATCAACCAACACAACATCCCACTTCGGAGGAACTGAGT
ATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGAGGGCATCACATTGC
TCGTAGAGTTTGGAAAGATTACTACGCCAAGGTTGATGCGGTTGTGTACC
TGGTAGATTCGTATGACAAGGAGAGGTTTGCTGAGTCGAAAAGGGAGCTT
GATGCCCTGCTTGCAGATGAATCCTTGGCCAGTGTACCATTCCTTAGTTT
TGGGGCAGCAGGATTGATATCCCATATGCTGCATCAGAAGATGAGTTGGC
ATATCGCCTTGGCCTCACCAGCTTCAGCACTGGGCAGTGGTAGGTGAATC
GGGTCGATTCGCATCTTCATGCGCCTTGGAGGGGACCGTATACAGGATTG
TACTGAGGAATTGGATACGACAGGGATTGAGGTGTTTGGTCGGGTATTTC
ATTTGGGGGGGGACTAACGGGGGAGGATGTGTGTGGATAGGTGGGGGCGC
GTAGCTGGCGGGGGAGGCGGAGGCCGCGCGCGGGGAGGGTGGGTGAGTGC
CGTCGAGTTGCGAAGTTTTATGGAGGATGTATCGGTTATGGTAGGATTCG
CATGCTGAAATTGTGTGTGTGGGAGAGGGGTGGGCGGGGGGGGCCGTGGA
GG
back to top