EY728507

Overview
NameEY728507
Unique NameEY728507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.366e-14
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 303
            Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:   45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 139          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.366e-14
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 303
            Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:   45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 139          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.366e-14
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 303
            Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:   45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 139          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 276
            + GG F     +   YP  APKV+  TK+YHPNID  G +CL++L++ W P L I TI+  +  L + PN +DPL ++ A + + N
Sbjct:   47 FEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVN 132          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 270
            Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:   45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 270
            Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:   45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 270
            Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:   45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 270
            Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:   45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 270
            Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:   45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 270
            Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:   45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
The following BLAST results are available for this feature:
BLAST of EY728507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
UB2D2_MOUSE5.366e-1436.84Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN5.366e-1436.84Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN5.366e-1436.84Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBE2N_DROME7.009e-1440.70Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UB2D3_RAT7.009e-1440.48Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB7.009e-1440.48Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE7.009e-1440.48Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA7.009e-1440.48Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN7.009e-1440.48Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG7.009e-1440.48Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-G02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728507 ID=EY728507; Name=EY728507; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGAGGATATTATGTAGGTGGTACATTTGTGTTTACTTTCCA
AGTATCTCCCATCTACCCTCATGAGGCACCAAAGGTCAAATGCAAGACAA
AGGTTTACCACCCCAATATCGACCTGGAGGGAAACGTCTGCCTCAACATT
TTAAGAGAAGACTGGAAACCGGTTCTGAATATAAACACCATCATTTATGG
ACTCTTCCATCTTTTCACGCAACCCAATTATGAGGATCCCCTCAATCATG
AAGCAGCAGCTGTTTTAAGGGATAACCCAAAACTGTTTGAATCCAATGTT
AGAAGAGCAATGGCTGGTGGATATGTGGGGCAAACCTTCTTCATTCGGTG
CATATAATTGCTTTTGCCTGGAAATGCATGTTGCTTTGAAGGTAAGGAGC
TGTAAATTTGGTCGCAGGGCTGCTTCAATTTCTAGTAATGTGTTGGGACA
AAAATCTAAAATCTGCAAGGGAGTCGAAGTTTGTTGCTGCTGTACTTTGT
TTGTGTTGTGAATTGGCTGAAACAAATATTCCTATTTCAGTGAATCGATG
GGTTGTGCAGCTGCACTTGAAATTATCAGGTATTATCTTGTTAGGGTGGC
AATGCTTGCTGCTAGTTTCTTACCTATACATCAATCTCTTAAAAAAGGGA
GACGGGGTCAGGTCGTTTATGGAGAAACTAAAAAAAGGAGAGAGGGCGGC
CGTGCAGCGAACGAGCGACNTGCCGTGCGGCGACGCATTCTCTCTGTAGG
TCGCTGAGTCGCGGCGGGCGTGTTGTAGGGAGGGGATGGGAACGCTGGGG
TGCCAGGGTACTCCTTATCAATGCCTGTGCGATGGGGGAAGAGGAGGGTC
NGCCGGGGGGTGCGGGGGGCGGGCGGGGGCGG
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