EY728507

Overview
NameEY728507
Unique NameEY728507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   64 YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 291
            YP+ AP VK  T  YHPN+D +GN+CL+IL++ W  + ++ TI+  +  L  +PN + PLN  AA + + NP  F+
Sbjct:   89 YPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFK 163          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   28 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 300
            GTF    + S  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:   51 GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   28 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 300
            GTF    + S  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:   51 GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   28 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 300
            GTF    + S  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:   51 GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   28 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 300
            GTF    + S  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:   51 GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   28 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 300
            GTF    + S  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:   51 GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.322e-12
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   16 YYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNP 279
            YY G  F  +      YP+  P +   + ++HPN+D+ GN+CL+IL++ W  V N+ TI+  L  L  +PN   PLN +AA +   +P
Sbjct:   72 YYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDP 159          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.726e-12
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN-INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 303
            Y GG +    ++   YP+++P V   TK+YHPN+D L G+VCL+++ + W P+ + +N     L  L   PN  DPLN EAAA++  +   +E  V+
Sbjct:   44 YQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVK 140          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.945e-12
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN-INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 303
            Y GG +    ++   YP+++P V   TK+YHPN+D + G+VCL+++ + W P+ + +N     L  L   PN  DPLN EAAA++  +   +E  V+
Sbjct:   44 YEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVK 140          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.945e-12
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   19 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 258
            + G  +  +   S  YP ++PKVK +T  +HPN+DL GN+CL+IL++ W    ++ TI+  +  L  +PN   PLN++AA
Sbjct:   80 FEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAA 159          
The following BLAST results are available for this feature:
BLAST of EY728507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
UBE2C_BOVIN1.012e-1242.11Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBE2B_RAT1.012e-1232.97Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT1.012e-1232.97Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE1.012e-1232.97Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN1.012e-1232.97Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN1.012e-1232.97Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC11_SCHPO1.322e-1236.36Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC4_ARATH1.726e-1237.11Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC5_ARATH2.945e-1236.08Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC19_ARATH2.945e-1238.75Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-G02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728507 ID=EY728507; Name=EY728507; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGAGGATATTATGTAGGTGGTACATTTGTGTTTACTTTCCA
AGTATCTCCCATCTACCCTCATGAGGCACCAAAGGTCAAATGCAAGACAA
AGGTTTACCACCCCAATATCGACCTGGAGGGAAACGTCTGCCTCAACATT
TTAAGAGAAGACTGGAAACCGGTTCTGAATATAAACACCATCATTTATGG
ACTCTTCCATCTTTTCACGCAACCCAATTATGAGGATCCCCTCAATCATG
AAGCAGCAGCTGTTTTAAGGGATAACCCAAAACTGTTTGAATCCAATGTT
AGAAGAGCAATGGCTGGTGGATATGTGGGGCAAACCTTCTTCATTCGGTG
CATATAATTGCTTTTGCCTGGAAATGCATGTTGCTTTGAAGGTAAGGAGC
TGTAAATTTGGTCGCAGGGCTGCTTCAATTTCTAGTAATGTGTTGGGACA
AAAATCTAAAATCTGCAAGGGAGTCGAAGTTTGTTGCTGCTGTACTTTGT
TTGTGTTGTGAATTGGCTGAAACAAATATTCCTATTTCAGTGAATCGATG
GGTTGTGCAGCTGCACTTGAAATTATCAGGTATTATCTTGTTAGGGTGGC
AATGCTTGCTGCTAGTTTCTTACCTATACATCAATCTCTTAAAAAAGGGA
GACGGGGTCAGGTCGTTTATGGAGAAACTAAAAAAAGGAGAGAGGGCGGC
CGTGCAGCGAACGAGCGACNTGCCGTGCGGCGACGCATTCTCTCTGTAGG
TCGCTGAGTCGCGGCGGGCGTGTTGTAGGGAGGGGATGGGAACGCTGGGG
TGCCAGGGTACTCCTTATCAATGCCTGTGCGATGGGGGAAGAGGAGGGTC
NGCCGGGGGGTGCGGGGGGCGGGCGGGGGCGG
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