EY728505 | Citrus Genome Database

Overview


Name	EY728505
Unique Name	EY728505
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	709

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 3

Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255

[Close]

BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 3

Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255

[Close]

BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 3

Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255

[Close]

BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 3

Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255

[Close]

BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 3

Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255

[Close]

BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 3

Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255

[Close]

BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 3

Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255

[Close]

BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 90/137 (65.69%), Postives = 115/137 (83.94%), Query Frame = 3

Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DL+  KITDFIKF+ GN+ MVTGG N GR+G+I NREKH GSF+ +H++D++G+ FATRL N+F IGKG+KPWVSLP+GKG++L+I EE  KR
Sbjct:  119 AKYKLCKVRKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKR 255

[Close]

BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 3

Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255

[Close]

BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 5.878e-52
Identity = 92/137 (67.15%), Postives = 113/137 (82.48%), Query Frame = 3

Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 422
            AK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255

The following BLAST results are available for this feature:

BLAST of EY728505 vs. ExPASy Swiss-Prot

BLAST of EY728505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53


Match Name	E-value	Identity	Description
RS4_BOVIN	3.446e-52	67.15	40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=...	[more]
RS4X_RAT	3.446e-52	67.15	40S ribosomal protein S4, X isoform OS=Rattus norv...	[more]
RS4X_MOUSE	3.446e-52	67.15	40S ribosomal protein S4, X isoform OS=Mus musculu...	[more]
RS4X_MESAU	3.446e-52	67.15	40S ribosomal protein S4, X isoform OS=Mesocricetu...	[more]
RS4X_MACFU	3.446e-52	67.15	40S ribosomal protein S4, X isoform OS=Macaca fusc...	[more]
RS4X_HUMAN	3.446e-52	67.15	40S ribosomal protein S4, X isoform OS=Homo sapien...	[more]
RS4X_FELCA	3.446e-52	67.15	40S ribosomal protein S4, X isoform OS=Felis catus...	[more]
RS4X_DANRE	3.446e-52	65.69	40S ribosomal protein S4, X isoform OS=Danio rerio...	[more]
RS4X_CERAE	3.446e-52	67.15	40S ribosomal protein S4, X isoform OS=Cercopithec...	[more]
RS4_XENTR	5.878e-52	67.15	40S ribosomal protein S4 OS=Xenopus tropicalis GN=...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-004-F12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728505 ID=EY728505; Name=EY728505; organism=Citrus sinensis; type=EST; length=709bp
CCACGCGTCCGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTT
GGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCG
CTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAG
AAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTC
ATGGTCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAG
GGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTG
GTCATGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATCGGGAAGGGT
TCAAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCAT
CATTGAGGAAGCTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTT
TTACAATGAATTTGGATGCATTTTGCTGCTTTGTTTTTTCTTGTTGAATT
AGAGCTGATTGGCACTCTCTAAAGCTGAAGTAGGACCGATGCAAAAATGA
ATCTTATTTTTATTTTTATTTTTATCAGCACAATTTTGAACCTGCTTTGT
CCTTTTTTATTTTAGCTACTATTTGGTGGATGTTATTTTNCACTATTTAA
TCTAAGTACATGTATCTCTCTCTCGATCGTGTCTGTNTGTAAAAAAAAAA
AAAAGGGCN