EY728505

Overview
NameEY728505
Unique NameEY728505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728505_ssr665 microsatellite EY728505_ssr665:665..674. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3442 contig Csv1_Contig3442:400..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = 3
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 380
            AK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ + E +I ++I  D G +V+++GGRN GRVG    I K   +H+     + I+D  G++F T L  VF IGK  +P + LP+G
Sbjct:  120 AKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPIGK-EEPLIKLPEG 250          
BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 3
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKG 380
            A+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ + E ++  +   +VG++V++ GGRN GRVG I + +        + I+DA G +  T L  VF I     +PW+SLP+G
Sbjct:  120 AQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLPEG 252          
BLAST of EY728505 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 3
Query:   72 INTYDGRTI--RYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 380
            +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G I ++ GGRN GRVG++K+ +K  G   T + ++DA G+ F T L  VF IG   +P +SLP+G
Sbjct:  140 LNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250          
The following BLAST results are available for this feature:
BLAST of EY728505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RS4E_STAMF1.325e-1134.0730S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_HYPBU8.587e-1132.3330S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_AERPE8.587e-1138.3930S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-F12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728505 ID=EY728505; Name=EY728505; organism=Citrus sinensis; type=EST; length=709bp
CCACGCGTCCGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTT
GGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCG
CTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAG
AAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTC
ATGGTCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAG
GGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTG
GTCATGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATCGGGAAGGGT
TCAAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCAT
CATTGAGGAAGCTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTT
TTACAATGAATTTGGATGCATTTTGCTGCTTTGTTTTTTCTTGTTGAATT
AGAGCTGATTGGCACTCTCTAAAGCTGAAGTAGGACCGATGCAAAAATGA
ATCTTATTTTTATTTTTATTTTTATCAGCACAATTTTGAACCTGCTTTGT
CCTTTTTTATTTTAGCTACTATTTGGTGGATGTTATTTTNCACTATTTAA
TCTAAGTACATGTATCTCTCTCTCGATCGTGTCTGTNTGTAAAAAAAAAA
AAAAGGGCN
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