EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CHLAA (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=frr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.403e-22
Identity = 55/131 (41.98%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            + ++ A  AL   L  +RTGRAS  +++H+ VE  G+ MPLN LA +SV + + + I PYD N +K +E AI  S LGLNP  DG+ +   +P LT+E  + + K+V    E+VK S+R  R+ A+D +KK
Sbjct:   11 AHLKKATEALRHHLASIRTGRASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQRRDAIDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRU0 (Ribosome-recycling factor OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=frr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.751e-22
Identity = 60/153 (39.22%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            E    + E +  +LSRE   +R GRA+  +LD I VE  GV  PLN LA ++V +++ L I+P+D +++K++E AI +S LG+ P  DG  +   IPALT+E  + + K V K  E+ K +IR  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 EKANQRFEQSFQSLSREYASIRAGRANASLLDRIQVEYYGVPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENQKIAIRNIRRDAMDEAKKQEKNKEITEDELKALEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_THET8 (Ribosome-recycling factor OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=frr PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.510e-22
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  289 TVKET---TVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSS--LPXDSMKRLEKE 750
            T+KE    T S M+ ++  L   L  LRTGRA+P +L H+ VE  G  +PLN +A V+  D +TL +  +D N LK +E AI  S LGLNP   G  L   IP LT+E  + + + V + +E+ + +IR  R++ALD +KK      L  D  KR E E
Sbjct:    2 TLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAE 160          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_THET2 (Ribosome-recycling factor OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=frr PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.510e-22
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  289 TVKET---TVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSS--LPXDSMKRLEKE 750
            T+KE    T S M+ ++  L   L  LRTGRA+P +L H+ VE  G  +PLN +A V+  D +TL +  +D N LK +E AI  S LGLNP   G  L   IP LT+E  + + + V + +E+ + +IR  R++ALD +KK      L  D  KR E E
Sbjct:    2 TLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAE 160          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACCN (Ribosome-recycling factor OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=frr PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.510e-22
Identity = 57/141 (40.43%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +G  V +++  +ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD  ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +ED K +IR  R+   D +KK
Sbjct:    1 MGQQVIKSSTEKMEKAVAAYSRELATVRAGRASASILDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRELVKVVKKYAEDAKVAIRNVRRDGNDELKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_SORC5 (Ribosome-recycling factor OS=Sorangium cellulosum (strain So ce56) GN=frr PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.809e-22
Identity = 63/153 (41.18%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  316 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKA---LDMMKKAGSSLPXDSMKRLEKESADDI 765
            +E AI AL R+L K+RTGRA+  MLD I V+  GV  P+  +A VSV + + +S+ P++ N +K +E AI  S LGLNP+VD   +   IP LT+E  + M K+  K  ED K +IR+ R+ A   +D ++K G  +  D   R +K+  DD+
Sbjct:   13 IEKAIEALRRDLAKVRTGRANAAMLDGIRVDYYGVPTPIVQMATVSVPEPRLISVKPWEKNQVKAIEKAIRESDLGLNPQVDADLIRLPIPPLTEERRREMVKLTKKNGEDCKVAIRKHRRDANEMIDSLEKDG-DVSGDEADRAKKK-VDDV 163          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_OCEIH (Ribosome-recycling factor OS=Oceanobacillus iheyensis GN=frr PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.809e-22
Identity = 55/130 (42.31%), Postives = 80/130 (61.54%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +ME A+ ALS+ L  +R GRA+P +LD + V+  G   PLN LA V   +++ L+I PYD + + ++E AI  + LGL+P  DG  +   IPALT+E  + + KVV K SE+ K  IR  R+   D +KK
Sbjct:   12 KMEQAVQALSKNLASVRAGRANPSILDSVFVDYYGASTPLNQLASVGAPEARLLTITPYDKSAIGDIEKAIQKADLGLSPSSDGNIIRINIPALTQERRKDLVKVVGKYSEEAKVQIRNIRRDTNDQLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACLD (Ribosome-recycling factor OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=frr PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.809e-22
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            V   T  +M+ AI A  REL  +R GRA+P +LD + VE  G + PLN +A ++V +++ L I PYD   L ++E AI  + LG+ P  DG  +   IP LT+E  + + K+V K SED K ++R  R+ A D +KK
Sbjct:    5 VMNETKERMQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEARMLVITPYDKTALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKKYSEDAKVAVRNIRRDANDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRA5 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype V GN=frr PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.281e-21
Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            + E +  +LSRE   +R GRA+  +LD I VE  G   PLN LA ++V +++ L I+P+D +++K++E AI  S LG+NP  DG  +   IPALT+E  + + K V K  E+ K +IR  R+ A+D  KK      +  D +K LEK+
Sbjct:   12 RFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRA3 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype III GN=frr PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.281e-21
Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            + E +  +LSRE   +R GRA+  +LD I VE  G   PLN LA ++V +++ L I+P+D +++K++E AI  S LG+NP  DG  +   IPALT+E  + + K V K  E+ K +IR  R+ A+D  KK      +  D +K LEK+
Sbjct:   12 RFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKD 159          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CHLAA4.403e-2241.98Ribosome-recycling factor OS=Chloroflexus aurantia... [more]
RRF_STRU05.751e-2239.22Ribosome-recycling factor OS=Streptococcus uberis ... [more]
RRF_THET87.510e-2240.25Ribosome-recycling factor OS=Thermus thermophilus ... [more]
RRF_THET27.510e-2240.25Ribosome-recycling factor OS=Thermus thermophilus ... [more]
RRF_BACCN7.510e-2240.43Ribosome-recycling factor OS=Bacillus cereus subsp... [more]
RRF_SORC59.809e-2241.18Ribosome-recycling factor OS=Sorangium cellulosum ... [more]
RRF_OCEIH9.809e-2242.31Ribosome-recycling factor OS=Oceanobacillus iheyen... [more]
RRF_BACLD9.809e-2240.88Ribosome-recycling factor OS=Bacillus licheniformi... [more]
RRF_STRA51.281e-2139.86Ribosome-recycling factor OS=Streptococcus agalact... [more]
RRF_STRA31.281e-2139.86Ribosome-recycling factor OS=Streptococcus agalact... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
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