EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRA1 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype Ia GN=frr PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.281e-21
Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            + E +  +LSRE   +R GRA+  +LD I VE  G   PLN LA ++V +++ L I+P+D +++K++E AI  S LG+NP  DG  +   IPALT+E  + + K V K  E+ K +IR  R+ A+D  KK      +  D +K LEK+
Sbjct:   12 RFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GEOMG (Ribosome-recycling factor OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=frr PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.281e-21
Identity = 56/152 (36.84%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKESAD 759
            + ME ++ AL RE  K+RTGRA+ G+LD I VE  G   PL+ +A +SV + +T++I P++   +  +E AI+++ LG  P  DG+ +  ++P LT+E  + + K + K +ED K ++R  R+  +D +KK      +  D +KR EKE  D
Sbjct:   11 AHMEKSVDALRREYQKVRTGRATTGLLDDIKVEYYGNPSPLSQVATLSVPEPRTITIQPWEAKLIPVIEKAIMNANLGFTPANDGKTIRISLPPLTEERRKEIVKTLKKMAEDTKVAVRNIRRDGIDSLKKLEKDKKISEDDLKRAEKEVQD 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GEOSM (Ribosome-recycling factor OS=Geobacter sp. (strain M21) GN=frr PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.673e-21
Identity = 53/150 (35.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  316 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKESAD 759
            M  +I +L +E  K+RTGRA+  +LD I +++ G   PLN +A +++ +++T++I+P+D   +  +E AI++S LGLNP  DG+ +   +P LT+E  + + K + + +E+ K ++R  R+ A+D +KK     S+  D +KR EK+  D
Sbjct:   13 MGKSIESLRKEYQKVRTGRATTSLLDDIKIDSYGTLSPLNQVATLAIPEARTITISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLVLPPLTEERRKDIVKQLKRDAEEAKVALRNIRRDAIDQLKKLEKDKSISEDELKRAEKDVQD 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CHLAD (Ribosome-recycling factor OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=frr PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.673e-21
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            + ++ A  AL   L  +RTGRAS  +++H+ VE  G  MPLN LA +SV + + + I PYD   +K +E AI  S LGLNP  DG+ +   +P LT+E  + + K+V    E+VK S+R  R+ A+D +KK
Sbjct:   11 AHLKKATEALRHHLASIRTGRASAALVEHLHVEAYGTNMPLNQLANISVPEPRMIIIQPYDTGMIKAIEKAIQQSDLGLNPSNDGRIIRLPVPPLTEERRRELVKMVRHRVEEVKVSVRNQRRDAIDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_SYNJB (Ribosome-recycling factor OS=Synechococcus sp. GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.185e-21
Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  316 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            M  A+ A  R    +RTGRA+  +LD I VE  GV  PL  LA ++  DS TL I P+DP+TL  +E AIV+S LGL P  DG+ +   IP LT+E  + + K VAK +E+ + SIR  R+  +D ++K      L  D  K L+ +
Sbjct:   10 MNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVSIRNIRRDGIDSVRKREKNGELSEDESKSLQDD 156          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_LEPCP (Ribosome-recycling factor OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.185e-21
Identity = 52/137 (37.96%), Postives = 86/137 (62.77%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +K+   ++M  ++ A   EL K+RTGRA PG+LD + V+  G  +PL+ +A V+++D++T+S+ P++ +  +++E AI  S LGLNP   G  +   +PALT+E  + + KVV    ED K ++R  R+ A D  KK
Sbjct:    6 IKKNAEAKMAKSVEAFKNELQKIRTGRAHPGILDQVHVDYYGSNLPLSQVANVTLIDARTISVQPWEKSMAQKIEKAIRESDLGLNPSSMGDLIRVPMPALTEERRKELTKVVRHAGEDSKVAVRNLRRDANDQAKK 142          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GEOUR (Ribosome-recycling factor OS=Geobacter uraniireducens (strain Rf4) GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.185e-21
Identity = 56/152 (36.84%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKESAD 759
            + M+  I AL +E  ++RTGRAS G+LD I V+  G   P+N +A ++V + +T+++ P+D   +  +E AI+++ LGL P  DG+ +   IP LT+E  + + K + K +ED K ++R  R+ A+D +KK      +  D +KR EKE  D
Sbjct:   11 THMDKTIDALRKEYQRVRTGRASTGLLDEIKVDFYGTPSPINQVATLAVPEPRTITLQPWDAKMIPVIEKAIMNANLGLTPANDGKVIRLNIPPLTEERRKDIVKQLKKLAEDAKVAVRNIRRDAIDELKKQEKDKKISEDDLKRAEKEVQD 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACP2 (Ribosome-recycling factor OS=Bacillus pumilus (strain SAFR-032) GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.185e-21
Identity = 55/137 (40.15%), Postives = 83/137 (60.58%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            V   T  +ME A+ A  REL  +R GRA+  +LD + V+  G + PLN +A ++V +++ L I PYD   + ++E +I  S LG+ P  DG  +  AIPALT+E  + + KVV K SE+ K ++R  R+ A D +KK
Sbjct:    5 VLNQTKEKMEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITPYDKTAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVRNVRRDANDELKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_SYMTH (Ribosome-recycling factor OS=Symbiobacterium thermophilum GN=frr PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.854e-21
Identity = 56/148 (37.84%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +M+ A+    +EL  +R  RA+P +LD + VE  G ++P+N++A + V D +TL I P+D + +K +E AI +S LGLNP  DGQ +  +IP +T+E  + + KVVAK +E+ + +IR  R+ A + +KK     ++  D  KR + E
Sbjct:   12 RMKKAVEVFRQELAGMRANRATPALLDKVRVEAYGSEVPVNNVATIEVPDPRTLVIKPWDRSLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKRTEEQRVAIRNIRRDANEQIKKLEKDKAVSEDESKRAQDE 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_METFK (Ribosome-recycling factor OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=frr PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.854e-21
Identity = 58/155 (37.42%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            VK T   +M+ +I AL  +L+K+RTGRA  G+LDH+ VE  G  + +N +A VS+ D++TL++  Y+ N   ++E AI  + LGLNP  +G  +   +P LT+E  + + KVV   +E+ K +IR  R+ A D +KK      +  D  +R + E
Sbjct:    5 VKNTAEQKMQKSIEALKADLSKVRTGRAHTGLLDHVQVEYYGSMVAINQVASVSLGDARTLNVQAYEKNMTPKVEKAIRDADLGLNPATNGDIIRVPMPMLTEERRRDLVKVVRSEAENAKVAIRNVRRDANDALKKLVKDKEISEDDERRAQDE 159          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRA11.281e-2139.86Ribosome-recycling factor OS=Streptococcus agalact... [more]
RRF_GEOMG1.281e-2136.84Ribosome-recycling factor OS=Geobacter metalliredu... [more]
RRF_GEOSM1.673e-2135.33Ribosome-recycling factor OS=Geobacter sp. (strain... [more]
RRF_CHLAD1.673e-2141.22Ribosome-recycling factor OS=Chloroflexus aggregan... [more]
RRF_SYNJB2.185e-2141.50Ribosome-recycling factor OS=Synechococcus sp. GN=... [more]
RRF_LEPCP2.185e-2137.96Ribosome-recycling factor OS=Leptothrix cholodnii ... [more]
RRF_GEOUR2.185e-2136.84Ribosome-recycling factor OS=Geobacter uraniireduc... [more]
RRF_BACP22.185e-2140.15Ribosome-recycling factor OS=Bacillus pumilus (str... [more]
RRF_SYMTH2.854e-2137.84Ribosome-recycling factor OS=Symbiobacterium therm... [more]
RRF_METFK2.854e-2137.42Ribosome-recycling factor OS=Methylobacillus flage... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
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