EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DESAA (Ribosome-recycling factor OS=Desulfatibacillum alkenivorans (strain AK-01) GN=frr PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.854e-21
Identity = 57/142 (40.14%), Postives = 89/142 (62.68%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIRRSRQKALDMMKKAG 708
            V E    +M+ AI AL + L ++RTGRAS  MLD + ++  G   P+N  A V++ +S+ ++I P+D + +K++E AI+ S LGLNP  DG+ +  AIP LT++  + M K+V K SE+ K   ++IRR   + +  MKK G
Sbjct:    5 VYEEAREKMDKAIAALEKGLLRVRTGRASLSMLDGVKLDYYGTPTPINQAATVAIPESRLITIQPWDASVIKDIEKAILKSDLGLNPSNDGKIIRIAIPPLTEDRRKEMVKLVNKMSEEGKISVRNIRRDANETIKSMKKDG 146          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_XANP2 (Ribosome-recycling factor OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=frr PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.727e-21
Identity = 59/148 (39.86%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKA--GSSLPXDSMKRLEKE 750
            +M+ A+  L  EL  LRTGRAS  +LD I +E  G +MPLN +A VSV +++ LS+  +D   +  +E AI  S LGLNP  +GQ L   IP L +E  Q + KV  K +E  K ++R  R+  +D +KK      +  D + RL K+
Sbjct:   14 RMQGAVGVLRDELGGLRTGRASASLLDPITIEAYGARMPLNQVATVSVPEARLLSVQVWDRGMVSAVEKAIRDSNLGLNPNTEGQVLRLRIPELNQERRQELVKVAHKYAEAAKVAVRHVRRDGMDHLKKVEKDGEMSSDDLDRLSKD 161          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRSY (Ribosome-recycling factor OS=Streptococcus suis (strain 05ZYH33) GN=frr PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.727e-21
Identity = 59/148 (39.86%), Postives = 90/148 (60.81%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKA--GSSLPXDSMKRLEKE 750
            +M  +  +L+RE + +R GRA+  +LD I VE  G   PLN LA ++V +++ L I P+D + LK++E A+ +S LGL P+ DG  +   IPALT+E  + + K V K  E+ K +IR  R+ A+D  KKA     +  D +K LEK+
Sbjct:   12 RMNQSHQSLAREFSHIRAGRANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRS2 (Ribosome-recycling factor OS=Streptococcus suis (strain 98HAH33) GN=frr PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.727e-21
Identity = 59/148 (39.86%), Postives = 90/148 (60.81%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKA--GSSLPXDSMKRLEKE 750
            +M  +  +L+RE + +R GRA+  +LD I VE  G   PLN LA ++V +++ L I P+D + LK++E A+ +S LGL P+ DG  +   IPALT+E  + + K V K  E+ K +IR  R+ A+D  KKA     +  D +K LEK+
Sbjct:   12 RMNQSHQSLAREFSHIRAGRANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_SERP5 (Ribosome-recycling factor OS=Serratia proteamaculans (strain 568) GN=frr PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.727e-21
Identity = 55/136 (40.44%), Postives = 85/136 (62.50%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMK 699
            +++   S+ME ++ A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI+SS LGLNP   G  +   +PALT+E  + + K+V   +E  + ++R  R+ A D +K
Sbjct:    5 IRKDADSRMEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGASTPLRQLASVTVEDSRTLKINVFDRSISAAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKIVRNEAEQGRVAVRNVRRDANDKVK 140          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_MAGSA (Ribosome-recycling factor OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.868e-21
Identity = 55/155 (35.48%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +K+    +M++A+  L +E + LR+GRAS  +LD ++VE  G  MPL+    V V + + L++  +D + +K +E AI ++ LGLNP+ DGQ +   IP L +E  + + KV  K SE  + S+R  R+  +D +KK      +  D +K+ EKE
Sbjct:   10 LKKDITRRMDSAVEVLKKEFSGLRSGRASINLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLTVQVWDKSQVKAVEKAIANAGLGLNPQADGQMIRVPIPPLNEERRKELQKVAGKYSEQARISVRNVRRDGMDTLKKMEKDGHISEDEIKKHEKE 164          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_LACCB (Ribosome-recycling factor OS=Lactobacillus casei (strain BL23) GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.868e-21
Identity = 54/141 (38.30%), Postives = 84/141 (59.57%), Query Frame = 1
Query:  334 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +L REL  +R GRA+  +L+ I VE  G   PLN +A +++ + + L ++PYD ++LK +E A+ +S LG+NP  DG  +   IP LT E  + + K V K SE  K +IR  R++ LD +K+      +  D + RLEK+
Sbjct:   19 SLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSPYDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAIRNIRREGLDKLKRQEKDGDITEDDLHRLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_LACC3 (Ribosome-recycling factor OS=Lactobacillus casei (strain ATCC 334) GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.868e-21
Identity = 54/141 (38.30%), Postives = 84/141 (59.57%), Query Frame = 1
Query:  334 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +L REL  +R GRA+  +L+ I VE  G   PLN +A +++ + + L ++PYD ++LK +E A+ +S LG+NP  DG  +   IP LT E  + + K V K SE  K +IR  R++ LD +K+      +  D + RLEK+
Sbjct:   19 SLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSPYDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAIRNIRREGLDKLKRQEKDGDITEDDLHRLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_THEEB (Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain BP-1) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.358e-21
Identity = 58/148 (39.19%), Postives = 87/148 (58.78%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSS--LPXDSMKRLEKE 750
            +M+ ++ A   +   +RTGRA+  +LD ++V+  G + PL  LA VS  D+ T+ I PYD +TL  +E AI  S LGL P  DG  +   IP LT E  + + K  AK +E  K +IR  R+ A+D +KKAG +  L  D +K L+++
Sbjct:    9 RMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILIQPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVAIRNIRRDAIDHIKKAGKAGELTEDEVKDLQEK 156          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRSV (Ribosome-recycling factor OS=Streptococcus sanguinis (strain SK36) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.358e-21
Identity = 55/155 (35.48%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            + E    +M  +  +L+RE   +R GRA+  +LD I VE  GV+ PLN +A +++ +++ L + P+D +++K++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E+ K +IR  R+ A+D  KK      +  D +K LEK+
Sbjct:    5 IVEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKD 159          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_DESAA2.854e-2140.14Ribosome-recycling factor OS=Desulfatibacillum alk... [more]
RRF_XANP23.727e-2139.86Ribosome-recycling factor OS=Xanthobacter autotrop... [more]
RRF_STRSY3.727e-2139.86Ribosome-recycling factor OS=Streptococcus suis (s... [more]
RRF_STRS23.727e-2139.86Ribosome-recycling factor OS=Streptococcus suis (s... [more]
RRF_SERP53.727e-2140.44Ribosome-recycling factor OS=Serratia proteamacula... [more]
RRF_MAGSA4.868e-2135.48Ribosome-recycling factor OS=Magnetospirillum magn... [more]
RRF_LACCB4.868e-2138.30Ribosome-recycling factor OS=Lactobacillus casei (... [more]
RRF_LACC34.868e-2138.30Ribosome-recycling factor OS=Lactobacillus casei (... [more]
RRF_THEEB6.358e-2139.19Ribosome-recycling factor OS=Thermosynechococcus e... [more]
RRF_STRSV6.358e-2135.48Ribosome-recycling factor OS=Streptococcus sanguin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
back to top