EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_SYNE7 (Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC 7942) GN=frr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 51/135 (37.78%), Postives = 80/135 (59.26%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSS 714
            S M+ ++ A  R    +RTGRA+  +LD I+V+  G + PL  LA +S  D+ TL I P+D +++  +E AI  S +GL P  DGQ +   IP LT +  + + K+ AK +E+ K +IR  R+ A+D ++K   S
Sbjct:    8 STMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVAIRNVRRDAIDSIRKLEKS 142          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_PELPD (Ribosome-recycling factor OS=Pelobacter propionicus (strain DSM 2379) GN=frr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 49/160 (30.63%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  289 TVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKESADD 762
            TV     + ME  +  L  E  K+RTGRAS  +LD + ++  G   P++ +A +++ + + ++I P++   +  +E AI ++ +GL P  DG+ +  ++P LT+E  + + K + K +ED + ++R  R+ A+D +KK     S+  D +K+ EKE  D+
Sbjct:    4 TVLSDMKTHMEKTVAVLKAEFQKVRTGRASTAILDSVKMDYYGNPTPISQIATLAIPEPRMITITPWEAKQISVIEKAIFNANIGLTPSNDGKSIRLSLPPLTEERRREIVKDLKKMAEDNRVALRNIRRDAIDRLKKLEKDKSITEDELKKYEKEVQDN 163          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_JANSC (Ribosome-recycling factor OS=Jannaschia sp. (strain CCS1) GN=frr PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 46/134 (34.33%), Postives = 82/134 (61.19%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSS 714
            +ME AI +L  E   LRTGRAS  ML+ ++V+  G   P+N +  V+V + + +++N +D   + ++E AI  S LG+NP+++G  ++  IP L +E  + + KV    +E+ + ++R  R+  +D +KKA +S
Sbjct:   15 RMEGAIASLRTEFASLRTGRASASMLEPVMVDAYGAMTPINQVGTVNVPEPRMVTVNVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGTYAENARVAVRNVRRDGMDQIKKADTS 148          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DESAH (Ribosome-recycling factor OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=frr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 52/162 (32.10%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMK--KAGSSLPXDSMKRLEKESAD 759
            I    KET   +M  ++  L +E+T++RTGRAS  MLD + V+  G   PLN +A +++ +S+ +++ P+D + +KE+E  I+ + +GL P  DG+ +   IP LT++  + + K V  T E+ K ++R  R+ + D +K  +    +  D   + +KE  D
Sbjct:    2 INELYKETR-DRMVKSVKTLEKEMTRVRTGRASMTMLDGVKVDYYGTLTPLNQMASIAIPESRMITVQPWDISAIKEVEKGILKANIGLTPSSDGKIIRITIPPLTEDRRREIAKTVHNTCEEFKVAVRNIRRDSNDTLKSLQKDGDISEDENFKAQKEVQD 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CYAP7 (Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7424) GN=frr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 51/147 (34.69%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  316 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            M+  I +  R    +RTGRA+  +LD ++V+  G + PL  LA ++  D+ T++I PYD  ++ ++E AI  S +GL P  DGQ +   IP LT E  + + K+  K +E+ K +IR  R+ A+D ++K      L  D  + L+ E
Sbjct:   10 MQKTIESTQRSFNTIRTGRANSALLDRVMVDYYGTETPLKSLANITTPDATTIAIQPYDRGSMGQIEKAIQLSDIGLTPNNDGQMIRLNIPPLTTERRKELVKLAGKLAEEGKVAIRNIRRDAIDSVRKQEKNHELSEDESRNLQDE 156          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CYAA5 (Ribosome-recycling factor OS=Cyanothece sp. (strain ATCC 51142) GN=frr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 52/147 (35.37%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  316 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            M+ ++ A  R    +RTGRA+  +LD + VE  G + PL  LA +S  D+ T+ I PYD  ++ ++E AI  S +GL P  DGQ +   IP LT+E  + + K+ +K +E+ K +IR  R+ A+D ++K    S +  D  + L+ +
Sbjct:   10 MQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVAIRNIRRDAIDDVRKQEKNSDISEDESRGLQDD 156          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CUPTR (Ribosome-recycling factor OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=frr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 46/136 (33.82%), Postives = 82/136 (60.29%), Query Frame = 1
Query:  295 KETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            K++   +M+ +I A   +L K+RTGRA  G+LDH+ V+  G  +P++ +A + + D++T+++ P++   +  +E AI    LGLNP   G+ +   +PALT+E  + + KVV   +E  K ++R  R+ A +  KK
Sbjct:    7 KKSAEQKMQKSIEAFKADLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVAAIGLADARTITVQPWEKKMVSAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVVKGEAEGAKVAVRNLRRDANEQFKK 142          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CLOPS (Ribosome-recycling factor OS=Clostridium perfringens (strain SM101 / Type A) GN=frr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMK--KAGSSLPXDSMKRLEKE 750
            +M   I +L+ EL  ++ GRA+P MLD I VE  G   PLN +A VS  + + L I P++   LKE+E AI+ S LG+NP  DG  +   +P LT+E  + + K V K  E  K +IR  R+ A D +K  K   ++  D MK+ E +
Sbjct:   12 KMNKTINSLNSELATMKAGRANPTMLDRIQVEYYGSMCPLNQVANVSSPEPRLLVITPWEKPMLKEIEKAILKSDLGINPNNDGTIIRLLVPELTEETRKNLVKNVKKVGEQAKVAIRSIRKDANDKVKNFKKEGTITEDEMKKGEDD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CLOPE (Ribosome-recycling factor OS=Clostridium perfringens GN=frr PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMK--KAGSSLPXDSMKRLEKE 750
            +M   I +L+ EL  ++ GRA+P MLD I VE  G   PLN +A VS  + + L I P++   LKE+E AI+ S LG+NP  DG  +   +P LT+E  + + K V K  E  K +IR  R+ A D +K  K   ++  D MK+ E +
Sbjct:   12 KMNKTINSLNSELATMKAGRANPTMLDRIQVEYYGSMCPLNQVANVSSPEPRLLVITPWEKPMLKEIEKAILKSDLGINPNNDGTIIRLLVPELTEETRKNLVKNVKKVGEQAKVAIRSIRKDANDKVKNFKKEGTITEDEMKKGEDD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CLOP1 (Ribosome-recycling factor OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=frr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMK--KAGSSLPXDSMKRLEKE 750
            +M   I +L+ EL  ++ GRA+P MLD I VE  G   PLN +A VS  + + L I P++   LKE+E AI+ S LG+NP  DG  +   +P LT+E  + + K V K  E  K +IR  R+ A D +K  K   ++  D MK+ E +
Sbjct:   12 KMNKTINSLNSELATMKAGRANPTMLDRIQVEYYGSMCPLNQVANVSSPEPRLLVITPWEKPMLKEIEKAILKSDLGINPNNDGTIIRLLVPELTEETRKNLVKNVKKVGEQAKVAIRSIRKDANDKVKNFKKEGTITEDEMKKGEDD 159          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SYNE71.731e-1837.78Ribosome-recycling factor OS=Synechococcus elongat... [more]
RRF_PELPD1.731e-1830.63Ribosome-recycling factor OS=Pelobacter propionicu... [more]
RRF_JANSC1.731e-1834.33Ribosome-recycling factor OS=Jannaschia sp. (strai... [more]
RRF_DESAH1.731e-1832.10Ribosome-recycling factor OS=Desulfobacterium auto... [more]
RRF_CYAP71.731e-1834.69Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_CYAA51.731e-1835.37Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_CUPTR1.731e-1833.82Ribosome-recycling factor OS=Cupriavidus taiwanens... [more]
RRF_CLOPS1.731e-1839.19Ribosome-recycling factor OS=Clostridium perfringe... [more]
RRF_CLOPE1.731e-1839.19Ribosome-recycling factor OS=Clostridium perfringe... [more]
RRF_CLOP11.731e-1839.19Ribosome-recycling factor OS=Clostridium perfringe... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
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