EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_AERS4 (Ribosome-recycling factor OS=Aeromonas salmonicida (strain A449) GN=frr PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.038e-18
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKA 684
            +K     +M  ++ +L  +++K+RTGRA P +LD I VE  G   PL  LA V   D++TLSI+ +D + ++ +E AI++S LGLNP  +GQ L   +P LT+E  + + K+V   +E  + ++R  R+ A
Sbjct:    5 IKNDAKDRMAKSVESLKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDARTLSISIFDRSMIQAVEKAILTSDLGLNPSSNGQTLRVPLPPLTEERRRDLTKIVRAEAEGARVAVRNIRRDA 135          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_AERHH (Ribosome-recycling factor OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=frr PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.038e-18
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKA 684
            +K     +M  ++ +L  +++K+RTGRA P +LD I VE  G   PL  LA V   D++TLSI+ +D + ++ +E AI++S LGLNP  +GQ L   +P LT+E  + + K+V   +E  + ++R  R+ A
Sbjct:    5 IKNDAKDRMAKSVESLKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDARTLSISIFDRSMIQAVEKAILTSDLGLNPSSNGQTLRVPLPPLTEERRRDLTKIVRAEAEGARVAVRNIRRDA 135          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_RHIEC (Ribosome-recycling factor OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=frr PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 48/131 (36.64%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKA 705
            +M+ A+ A   ++  LRTGRAS  +LD + +E  G ++PLN +A ++V + + L+++ +D + +  +E  I  S LGLNP VDGQ L   +P L +E  +++ KV    +E  K +IR  R+  +D +KKA
Sbjct:   13 RMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITVPEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHDYAEKSKVAIRHVRRDGMDGLKKA 143          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_RHIE6 (Ribosome-recycling factor OS=Rhizobium etli (strain CIAT 652) GN=frr PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 48/131 (36.64%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKA 705
            +M+ A+ A   ++  LRTGRAS  +LD + +E  G ++PLN +A ++V + + L+++ +D + +  +E  I  S LGLNP VDGQ L   +P L +E  +++ KV    +E  K +IR  R+  +D +KKA
Sbjct:   13 RMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITVPEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHDYAEKSKVAIRHVRRDGMDGLKKA 143          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_MANSM (Ribosome-recycling factor OS=Mannheimia succiniciproducens (strain MBEL55E) GN=frr PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 51/136 (37.50%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMK 699
            +K+ T  +ME ++ AL   + K+RTGRA P +LD I V+  G   PL  LA V   D++TL++  +D + ++ +E AI++S LGLNP   G  +   +P LT+E  + + K+V    E  K +IR  R+ A D +K
Sbjct:    5 IKKDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLAVTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAIRNVRRDANDKIK 140          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_HAEI8 (Ribosome-recycling factor OS=Haemophilus influenzae (strain 86-028NP) GN=frr PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 51/136 (37.50%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMK 699
            +K+    +ME ++ AL   ++K+RTGRA P +LD I VE  G   PL  LA V   D++TL++  +D + +  +E AI++S LGLNP   G  +   +P LT+E  + + K+V    E  K +IR  R+ A D +K
Sbjct:    5 IKKDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAIRNVRRDANDKIK 140          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GLUOX (Ribosome-recycling factor OS=Gluconobacter oxydans GN=frr PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 50/143 (34.97%), Postives = 88/143 (61.54%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMK--KAGSSLPXDSMK 735
            +M+ AI +L R+L+ LR+GRASP +L+ + VE  G ++PL+ +  ++V +++ L+++ +D   +  +E AI  S LGLNP  DGQ +   IPALT+E    + +  ++ +E+ K S+R  R+  ++  K  +  S +  D MK
Sbjct:   15 RMDGAIESLRRDLSGLRSGRASPNLLEPVRVEAYGSEVPLSQVGSIAVPEARMLTVSVWDRTVVGAVERAIRDSGLGLNPSTDGQTVRVPIPALTEERRNELARAASRYAENGKISVRGVRRDGMEQTKALEKKSEISQDDMK 157          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_FLAJ1 (Ribosome-recycling factor OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=frr PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 50/154 (32.47%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKA-LDMMKKAGSSLPXDSMKRLEKE 750
            + E+T   M  +I  L +E   +R G+ASP ML  + V+  G   PL+ ++ +SV D++T+++ P++ N L+ +E AI+ + +G NP  +G  +I ++P LT+E  + + K     +ED K  IR  R+ A  D+ K        D  K  E+E
Sbjct:    8 ILESTEESMNGSIAHLEKEFLNIRAGKASPAMLGGVFVDYYGSATPLSQVSKISVPDARTITLQPFEKNMLQAIEKAILIANIGFNPMNNGDVIIISVPPLTEERRRDLAKQAKSEAEDAKIGIRNVRKDANTDIKKLEKEGTSEDICKSAEEE 161          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CHLCH (Ribosome-recycling factor OS=Chlorobium chlorochromatii (strain CaD3) GN=frr PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKAL-DMMKKAGSSLPXDSMKRLEKESADDI 765
            +M+  + A   E+T +RTG+A+  +LD + VE  G +MPL  +  VSV D+ TL +  +D + +   E AI  + LGLNP  +GQ +  +IP LT+E  +   K+  K  ED K S+R  R+  + D+ K   +    +  K   K+ ADD+
Sbjct:   13 KMKKCLEAFQHEITTIRTGKATTTLLDRVKVEAYGQQMPLKQVGNVSVQDAHTLMVQVWDKSMVSATEKAIRDANLGLNPAAEGQSIRVSIPPLTEERRKEFVKLTKKFGEDSKVSLRNLRRDMIQDIEKLEKAKAVSEDEKNKGKKDADDL 164          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CAMJD (Ribosome-recycling factor OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=frr PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +Q E ++ AL ++ T LRTG+ +  +LDHI V+  G + PLN +A V   D+ T+SI P++   LK +E AI ++ +G+NP  DG+ +    P +T+E  +   K      E  K SIR  R+ A D +KK
Sbjct:   11 TQSEKSLEALKKDFTTLRTGKINTHILDHITVDYYGNQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKK 141          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_AERS45.038e-1837.40Ribosome-recycling factor OS=Aeromonas salmonicida... [more]
RRF_AERHH5.038e-1837.40Ribosome-recycling factor OS=Aeromonas hydrophila ... [more]
RRF_RHIEC6.579e-1836.64Ribosome-recycling factor OS=Rhizobium etli (strai... [more]
RRF_RHIE66.579e-1836.64Ribosome-recycling factor OS=Rhizobium etli (strai... [more]
RRF_MANSM6.579e-1837.50Ribosome-recycling factor OS=Mannheimia succinicip... [more]
RRF_HAEI86.579e-1837.50Ribosome-recycling factor OS=Haemophilus influenza... [more]
RRF_GLUOX6.579e-1834.97Ribosome-recycling factor OS=Gluconobacter oxydans... [more]
RRF_FLAJ16.579e-1832.47Ribosome-recycling factor OS=Flavobacterium johnso... [more]
RRF_CHLCH6.579e-1834.87Ribosome-recycling factor OS=Chlorobium chlorochro... [more]
RRF_CAMJD6.579e-1837.40Ribosome-recycling factor OS=Campylobacter jejuni ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
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