EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRP1 (Ribosome-recycling factor OS=Streptococcus pyogenes serotype M1 GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.304e-21
Identity = 57/153 (37.25%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            ET   +   +  +LSRE   +R GRA+  +LD I V+  G   PLN LA ++V +++ L I+P+D +++K++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E+ K +IR  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 ETAKERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRGC (Ribosome-recycling factor OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.304e-21
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            + E    +M  +   L+RE   +R GRA+  +LD I VE  GV+ PLN +A +++ +++ L + P+D ++LK++E AI +S LG+ P  DG  +   IPALT+E  + + K V K  E+ K +IR  R+ A+D  KK      +  D +K LEK+
Sbjct:    5 IVEKAKERMSHSHQNLAREFGAVRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGENAKIAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GEOSF (Ribosome-recycling factor OS=Geobacter sp. (strain FRC-32) GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.304e-21
Identity = 55/152 (36.18%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKESAD 759
            S M+  I +L +E  K+RTGRAS  +LD I V+  G   PLN +A ++V + +T+++ P+D   +  +E AI+++ LGL P  DG+ +   +P LT+E  + + K + K +ED K ++R  R++A+D +KK      +  D +KR EK+  D
Sbjct:   11 SHMDKTIDSLRKEYQKVRTGRASTSLLDEIKVDFYGTLSPLNQVATLAVPEPRTITLQPWDAKMIPPIEKAIMNANLGLTPANDGKLIRLNLPPLTEERRKEIVKQLKKFAEDAKVAVRNIRREAIDDLKKLEKEKKISEDDLKRAEKDVQD 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DESVV (Ribosome-recycling factor OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.304e-21
Identity = 56/148 (37.84%), Postives = 91/148 (61.49%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +ME AI AL RE ++LRTGRAS  ++D I V+  G   P++ +A V+V DS+ ++I P+D N    +E AI+ S LGLNP  DG+ +   IP LT+E  + + K+  K +E+ K ++R  R+ A + +KK      L  D +++ +++
Sbjct:   13 RMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQED 160          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DESVH (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.304e-21
Identity = 56/148 (37.84%), Postives = 91/148 (61.49%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +ME AI AL RE ++LRTGRAS  ++D I V+  G   P++ +A V+V DS+ ++I P+D N    +E AI+ S LGLNP  DG+ +   IP LT+E  + + K+  K +E+ K ++R  R+ A + +KK      L  D +++ +++
Sbjct:   13 RMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQED 160          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BRAJA (Ribosome-recycling factor OS=Bradyrhizobium japonicum GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.304e-21
Identity = 60/144 (41.67%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKR 738
            +M+ A+ +L  EL  LRTGRAS  MLD + VE  G  MPLN LA VSV + + +S+  +D + +K +E AIV S LGL+P  +GQ L   IP L +E  + + KV  K +E  K + R  R+  LD++KK      +  D  KR
Sbjct:   15 RMQGAVQSLKHELGGLRTGRASASMLDPVQVEAYGSHMPLNQLATVSVPEPRLISVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVRRDGLDVLKKLEKNHEMSEDDQKR 158          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACWK (Ribosome-recycling factor OS=Bacillus weihenstephanensis (strain KBAB4) GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.304e-21
Identity = 55/141 (39.01%), Postives = 88/141 (62.41%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +G  V +++  +ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD  ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R+ + D +KK
Sbjct:    1 MGQQVLKSSNEKMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDSNDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRS7 (Ribosome-recycling factor OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 57/153 (37.25%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            ET   +   +  +L+RE   +R GRA+  +LD I V+  G   PLN LA ++V +++ L I+P+D +++K++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E  K SIR  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 ETAKERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDEAKKQEKAKEITEDELKALEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STREM (Ribosome-recycling factor OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 57/153 (37.25%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            ET   +   +  +L+RE   +R GRA+  +LD I V+  G   PLN LA ++V +++ L I+P+D +++K++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E  K SIR  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 ETAKERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDEAKKQEKAKEITEDELKALEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRE4 (Ribosome-recycling factor OS=Streptococcus equi subsp. equi (strain 4047) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 57/153 (37.25%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            ET   +   +  +L+RE   +R GRA+  +LD I V+  G   PLN LA ++V +++ L I+P+D +++K++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E  K SIR  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 ETAKERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDEAKKQEKAKEITEDELKALEKD 159          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRP18.304e-2137.25Ribosome-recycling factor OS=Streptococcus pyogene... [more]
RRF_STRGC8.304e-2136.77Ribosome-recycling factor OS=Streptococcus gordoni... [more]
RRF_GEOSF8.304e-2136.18Ribosome-recycling factor OS=Geobacter sp. (strain... [more]
RRF_DESVV8.304e-2137.84Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_DESVH8.304e-2137.84Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_BRAJA8.304e-2141.67Ribosome-recycling factor OS=Bradyrhizobium japoni... [more]
RRF_BACWK8.304e-2139.01Ribosome-recycling factor OS=Bacillus weihenstepha... [more]
RRF_STRS71.085e-2037.25Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_STREM1.085e-2037.25Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_STRE41.085e-2037.25Ribosome-recycling factor OS=Streptococcus equi su... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
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