EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_PSEPW (Ribosome-recycling factor OS=Pseudomonas putida (strain W619) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 60/158 (37.97%), Postives = 91/158 (57.59%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPXDSMKRLEKESADDI 765
            +K+    +M  +I AL R L  +RTGRA P +LD + V   G +MPLN +A VSV D++TL I  +D N    +E AI++S LGLNP   G  +   +PALT+E  +   K  +  +ED K ++R  R+ AL  +KK   +   +  +  E+ +AD+I
Sbjct:    5 IKKDAQDRMGKSIEALGRNLASIRTGRAHPSILDSVKVPAWGSEMPLNQVAAVSVEDARTLKIVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASAVAEDAKVAVRNVRRDALADLKKL--TKDKEISEDEERRAADEI 160          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_MOOTA (Ribosome-recycling factor OS=Moorella thermoacetica (strain ATCC 39073) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 55/148 (37.16%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMK--KAGSSLPXDSMKRLEKE 750
            +M+ A+  L REL  LR GRA+P +L+ ++V   G   P+N LA VS  +++ L I P+D N L E+E AI+ S LGL P  DG  +   IP LT+E    + KV  K +E+ +  +R +R++A D +K  +       D +KR +++
Sbjct:   12 KMKKAVEGLRRELASLRAGRANPALLEKVLVSYYGTPTPVNQLATVSSPEARLLVIQPWDRNILPEIEKAILKSDLGLTPSSDGTVIRITIPQLTEERRSELVKVARKKAEEFRVMVRNARREANDKLKASEKNKEASEDEVKRAQEK 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DESHY (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain Y51) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 61/159 (38.36%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            I   +KE    +M  A+ AL RE   +R GRA+P MLD I VE  G + P+N LA +SV + + L+I P+D ++L  +E AI+ S LGLNP  DG  +   IP LT E    + K V K +ED + ++R  R+ + D +KK     +   D +KR + +
Sbjct:    2 INDVLKEAE-DRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DESHD (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 61/159 (38.36%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            I   +KE    +M  A+ AL RE   +R GRA+P MLD I VE  G + P+N LA +SV + + L+I P+D ++L  +E AI+ S LGLNP  DG  +   IP LT E    + K V K +ED + ++R  R+ + D +KK     +   D +KR + +
Sbjct:    2 INDVLKEAE-DRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DEIRA (Ribosome-recycling factor OS=Deinococcus radiodurans GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 57/154 (37.01%), Postives = 89/154 (57.79%), Query Frame = 1
Query:  289 TVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPXDSMKRLEKE 750
            +++  T  +M  AI A    L+ LRTGRA+PG+L  I+V+  G +MP++ +A ++  D +TL I P+D   L  +E AI  S LGLNP   G  +  ++P LT+E  + + K     +ED + ++R  R+ ALD +KK    L  D +KR E +
Sbjct:    6 SIQADTREKMNKAIEAFENNLSVLRTGRANPGILKKIVVDYYGSQMPIDQVASITTPDPRTLVITPWDRGALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNLRKHALDEVKKV-EGLGEDEIKRGEAD 158          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACHK (Ribosome-recycling factor OS=Bacillus thuringiensis subsp. konkukian GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 55/141 (39.01%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +G  V +++  +ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD  ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R+   D +KK
Sbjct:    1 MGQQVLKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACCZ (Ribosome-recycling factor OS=Bacillus cereus (strain ZK / E33L) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 55/141 (39.01%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +G  V +++  +ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD  ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R+   D +KK
Sbjct:    1 MGQQVLKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACC3 (Ribosome-recycling factor OS=Bacillus cereus (strain 03BB102) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 55/141 (39.01%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +G  V +++  +ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD  ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R+   D +KK
Sbjct:    1 MGQQVLKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACC2 (Ribosome-recycling factor OS=Bacillus cereus (strain G9842) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 55/141 (39.01%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +G  V +++  +ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD  ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R+   D +KK
Sbjct:    1 MGQQVLKSSNEKMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACC0 (Ribosome-recycling factor OS=Bacillus cereus (strain AH820) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 55/141 (39.01%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +G  V +++  +ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD  ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R+   D +KK
Sbjct:    1 MGQQVLKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKK 141          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_PSEPW1.085e-2037.97Ribosome-recycling factor OS=Pseudomonas putida (s... [more]
RRF_MOOTA1.085e-2037.16Ribosome-recycling factor OS=Moorella thermoacetic... [more]
RRF_DESHY1.085e-2038.36Ribosome-recycling factor OS=Desulfitobacterium ha... [more]
RRF_DESHD1.085e-2038.36Ribosome-recycling factor OS=Desulfitobacterium ha... [more]
RRF_DEIRA1.085e-2037.01Ribosome-recycling factor OS=Deinococcus radiodura... [more]
RRF_BACHK1.085e-2039.01Ribosome-recycling factor OS=Bacillus thuringiensi... [more]
RRF_BACCZ1.085e-2039.01Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC31.085e-2039.01Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC21.085e-2039.01Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC01.085e-2039.01Ribosome-recycling factor OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
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