EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACAH (Ribosome-recycling factor OS=Bacillus thuringiensis (strain Al Hakam) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 55/141 (39.01%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +G  V +++  +ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD  ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R+   D +KK
Sbjct:    1 MGQQVLKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACAC (Ribosome-recycling factor OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 55/141 (39.01%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +G  V +++  +ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD  ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R+   D +KK
Sbjct:    1 MGQQVLKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 60/170 (35.29%), Postives = 99/170 (58.24%), Query Frame = 1
Query:  259 STVEIVDIGPTVKETTVSQ-MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPXDSMKRLEKESADDI 765
            +T+E V+   ++ ET   Q ME  I  +      +RT RASP MLD I VE  G  + L  +A +S  D+ +L I+PYD ++LK +E AIV+S LG++P  DG+ +  ++P LT +  + + KVV+K +E+ K ++R  R+ AL   +K       +  K+L +++  D+
Sbjct:   79 ATMEEVEAEKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGKVAVRNIRRDALKSYEK------LEKEKKLSEDNVKDL 242          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRZT (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            E    +M  +  +L+RE   +R GRA+  +LD + VE  GV+ PLN +A +++ +++ L + P+D ++LK++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E+ K ++R  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 EKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRZJ (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain JJA) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            E    +M  +  +L+RE   +R GRA+  +LD + VE  GV+ PLN +A +++ +++ L + P+D ++LK++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E+ K ++R  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 EKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRPJ (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            E    +M  +  +L+RE   +R GRA+  +LD + VE  GV+ PLN +A +++ +++ L + P+D ++LK++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E+ K ++R  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 EKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRPI (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            E    +M  +  +L+RE   +R GRA+  +LD + VE  GV+ PLN +A +++ +++ L + P+D ++LK++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E+ K ++R  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 EKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRP7 (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain 70585) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            E    +M  +  +L+RE   +R GRA+  +LD + VE  GV+ PLN +A +++ +++ L + P+D ++LK++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E+ K ++R  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 EKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRP4 (Ribosome-recycling factor OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  298 ETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            E    +M  +  +L+RE   +R GRA+  +LD + VE  GV+ PLN +A +++ +++ L + P+D ++LK++E A+ +S LG+ P  DG  +   IPALT+E  + + K V K  E+ K ++R  R+ A+D  KK      +  D +K LEK+
Sbjct:    7 EKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_PROMM (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9313) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 51/129 (39.53%), Postives = 80/129 (62.02%), Query Frame = 1
Query:  316 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            M  ++ A  R    +RTGRA+P +LD I VE  G + PL  LA +S  DS+T++I P+D  ++  +E AI +S LGL P  DG+ +   +P LT+E  +  CK+ A+ +E+ K ++R  R+ A+D +KK
Sbjct:   10 MHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAIQPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAARYAEEGKVALRNIRRDAIDKVKK 138          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BACAH1.085e-2039.01Ribosome-recycling factor OS=Bacillus thuringiensi... [more]
RRF_BACAC1.085e-2039.01Ribosome-recycling factor OS=Bacillus anthracis (s... [more]
RRFC_SPIOL1.085e-2035.29Ribosome-recycling factor, chloroplastic OS=Spinac... [more]
RRF_STRZT1.416e-2035.29Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRZJ1.416e-2035.29Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRPJ1.416e-2035.29Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRPI1.416e-2035.29Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRP71.416e-2035.29Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRP41.416e-2035.29Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_PROMM1.416e-2039.53Ribosome-recycling factor OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
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