EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GRAFK (Ribosome-recycling factor OS=Gramella forsetii (strain KT0803) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 55/160 (34.38%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPXDSMKRLEKESADDIXQ 771
            + E     ME AI  L ++L+ +R G+ASP ML  ++VE  G + PL  +A V+  D++TLSI P++ + + E+E  I+ + LG NP  +G+ +I  +P LT+E  + + K     +ED K  +R  R++A+  +KKA      D  + L K S D++ +
Sbjct:    7 ILEEAKEGMEKAITHLKKQLSNIRAGKASPSMLGSVMVEYYGSQTPLQQVANVNTPDARTLSIQPFEKSLITEIERGIMLANLGFNPMNNGESVIINVPPLTEERRKQLSKQAKAEAEDAKVGVRNDRKQAMQELKKA------DISEDLLKSSEDEVQE 160          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CORDI (Ribosome-recycling factor OS=Corynebacterium diphtheriae GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 58/158 (36.71%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  316 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK------AGSSLPXDSMKRLEKESADDIXQ 771
            M  ++     EL  +RTGRA+P M + +I +  GV  P+  +A +SV +++ L I PY+ + + E+E AI +S LG+NP  DGQ L   IP LT+E  + M K+     ED K +IR  R+K +D +KK      AG      + K L+K +A  + Q
Sbjct:   13 MNTSVERTRDELVNIRTGRANPAMFNGVIADYYGVPTPITQMATISVPEARMLLIKPYEMSMMNEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMAKLAKSKGEDGKIAIRNVRRKGMDQLKKIQKDGDAGEDEVQAAEKELDKVTAKYVAQ 170          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CLOBM (Ribosome-recycling factor OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 59/147 (40.14%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK-AGSSLPXDSMKRLEKE 750
            +M  +IVAL REL  ++ GRA+P MLD I  E  G   PLN LA +SV +++ L I P+D +++  +E AI+ S LGLNP  DG  +   IP LT+E  + + K V KT E+ K +IR  R+   D +K      +  D +K+ E +
Sbjct:   12 KMGKSIVALKRELASMKAGRANPAMLDRIDAEYYGSMTPLNQLANISVPEARVLLIQPWDKSSMGAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEETKVAIRSIRRDCNDDVKNLKKDDVSEDDIKKTEDD 158          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CAUSK (Ribosome-recycling factor OS=Caulobacter sp. (strain K31) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 56/148 (37.84%), Postives = 90/148 (60.81%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKA--GSSLPXDSMKRLEKE 750
            +M+ A+++L  +   LRTGRAS G+LD I+V   G  + LN +A +SV + + +++N +D   +  +E AI +S LGLNP V+G  L   IP LT+E  + + K+  K +E  K ++R  R+ A D +KKA   S +  D +K++E E
Sbjct:   15 RMDKAVLSLKEDFAGLRTGRASSGLLDQIMVNAYGSMVQLNTVASISVPEPRQINVNIWDKGVVSAVEKAIRNSDLGLNPVVEGNNLRIPIPPLTEERRKDLVKIAGKYAEAQKVAVRNIRRDANDDLKKAEKASVISEDELKKMETE 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CAUCR (Ribosome-recycling factor OS=Caulobacter crescentus GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 58/148 (39.19%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKA--GSSLPXDSMKRLEKE 750
            +M+ A+ AL  E   LRTGRAS  +LD ++VE  G   PLN +A VSV + + ++++ +D   +  +E AI +S LGLNP V+GQ L   IP LT+E  + + K+  K +E  K ++R  R+ A D +KKA    ++  D  K++E E
Sbjct:   15 RMDKAVSALKEEFGSLRTGRASASLLDQVMVEAYGSTTPLNAVASVSVPEPRQINVSVWDRGVVVSVEKAIRASGLGLNPVVEGQNLRIPIPPLTEERRRDLQKIAGKYAEQQKIAVRNVRRDANDDLKKAEKDGAIAEDERKKMETE 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CAUCN (Ribosome-recycling factor OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 58/148 (39.19%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKA--GSSLPXDSMKRLEKE 750
            +M+ A+ AL  E   LRTGRAS  +LD ++VE  G   PLN +A VSV + + ++++ +D   +  +E AI +S LGLNP V+GQ L   IP LT+E  + + K+  K +E  K ++R  R+ A D +KKA    ++  D  K++E E
Sbjct:   15 RMDKAVSALKEEFGSLRTGRASASLLDQVMVEAYGSTTPLNAVASVSVPEPRQINVSVWDRGVVVSVEKAIRASGLGLNPVVEGQNLRIPIPPLTEERRRDLQKIAGKYAEQQKIAVRNVRRDANDDLKKAEKDGAIAEDERKKMETE 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BREBN (Ribosome-recycling factor OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 55/138 (39.86%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  289 TVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            TV      +M  AI AL R+L+ LR GRA+P MLD + V+  G   P++ LA +SV + + L+I P+D   LKE++ A+  S LG++P  DG  +   IP LT+E  + + K+  K  E+ K +IR  R+ A D +KK
Sbjct:    4 TVLNDMEDRMNKAINALKRDLSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISVPEPRMLTIQPWDKTALKEIDRALQQSDLGISPSNDGVIIRLIIPPLTEERRKELVKLAGKGGEEAKVAIRNIRRDANDEIKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_AZOC5 (Ribosome-recycling factor OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=frr PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 57/148 (38.51%), Postives = 87/148 (58.78%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +M  A+ +L +EL  LRTGRAS  +L+ I V+  G  MPL  +A VSV + + LS+  +D   +  +E AI  S LGLNP  +GQ L   IP L +E  + + KV  K +E  + ++R  R+  +D++KK    S++  D M+RL K+
Sbjct:   13 RMAGAVTSLKQELGGLRTGRASASLLEPITVDAYGANMPLAQVATVSVPEPRLLSVQVWDRGMVNAVEKAIRDSNLGLNPNTEGQTLRIRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGMDLLKKLEKDSAISSDDMERLSKD 160          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_SYNP2 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=frr PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.850e-20
Identity = 58/147 (39.46%), Postives = 81/147 (55.10%), Query Frame = 1
Query:  316 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            M+  I A  R    LRTGRAS  +LD I VE  G + PL  LA +S  DS T+ I P+D  +L ++E AI  S LGL P  DG  +   IP LTKE  Q + K   K +E+ K ++R  R+ A+D ++K    S +  D  + L+ +
Sbjct:   10 MQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTIMIQPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGKLAEEGKVALRNIRRDAIDDVRKQEKNSDISEDESRSLQDD 156          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_RHOPS (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain BisB5) GN=frr PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.850e-20
Identity = 59/148 (39.86%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +M  A  AL  EL  LRTGRAS  ML+ + V+  G  MPLN +A VSV + + LS+  +D + +K +E AIV S LGL+P  +GQ L   IP L ++  + + KV  K +E  + ++R  R+  LD++KK      +  D  KRL+ E
Sbjct:   14 RMHGASQALQHELGGLRTGRASASMLEPVQVDAYGTHMPLNQVATVSVPEPRLLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNQDRRKELVKVAHKYAEAARVAVRHVRRDGLDIIKKLEKAHEISEDDQKRLDHE 161          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_GRAFK1.416e-2034.38Ribosome-recycling factor OS=Gramella forsetii (st... [more]
RRF_CORDI1.416e-2036.71Ribosome-recycling factor OS=Corynebacterium dipht... [more]
RRF_CLOBM1.416e-2040.14Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CAUSK1.416e-2037.84Ribosome-recycling factor OS=Caulobacter sp. (stra... [more]
RRF_CAUCR1.416e-2039.19Ribosome-recycling factor OS=Caulobacter crescentu... [more]
RRF_CAUCN1.416e-2039.19Ribosome-recycling factor OS=Caulobacter crescentu... [more]
RRF_BREBN1.416e-2039.86Ribosome-recycling factor OS=Brevibacillus brevis ... [more]
RRF_AZOC51.416e-2038.51Ribosome-recycling factor OS=Azorhizobium caulinod... [more]
RRF_SYNP21.850e-2039.46Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_RHOPS1.850e-2039.86Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
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