EY728479

Overview
NameEY728479
Unique NameEY728479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728479_ssr299 microsatellite EY728479_ssr299:299..313. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:77..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNJA2_BOVIN (DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.769e-36
Identity = 80/189 (42.33%), Postives = 107/189 (56.61%), Query Frame = 2
Query:   83 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQMQHPCNECKGTGE 646
            +TK Y+ILGV   AS+++LKKAYRK A + HPDK  +  +KFKE++ AYEVLS+P+KRE+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+ QMQ  C++C G GE
Sbjct:    6 DTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFSFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGE 194          

HSP 2 Score: 25.409 bits (54), Expect = 1.769e-36
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  649 INDKDRWPPCKGEKVDPEKK 708
            IN+KDR   C+G+KV  E K
Sbjct:  196 INEKDRCKKCEGKKVIKEVK 215          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.625e-35
Identity = 88/220 (40.00%), Postives = 120/220 (54.55%), Query Frame = 2
Query:   86 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQMQHPCNECKGTGETSMTRIAGHHVRVRRSIPRKNLGGI-VEKGIK 739
            T+YY+ILGV  +AS +++KKAYRK A+K HPDK  D  EKFK ++QAYEVLSDP+KR++YDQ GE A+KE          P DI                       ++V+H L V+LEDLYNG + KL+L +NVI                    +G GM++ I+ +GP M+ Q+Q  C ECKG GE    +         + I  K +  + VEKG+K
Sbjct:    5 TQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYDQGGEQAIKEGGSGSPSFSSPMDI------FDMFFGGGGRMARERRGKNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCESCSGAKVIREKKIIEVHVEKGMK 218          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.347e-34
Identity = 84/220 (38.18%), Postives = 121/220 (55.00%), Query Frame = 2
Query:   86 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQMQHPCNECKGTGETSMTRIAGHHVRVRRSIPRKNLGGI-VEKGIK 739
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG + KL+L +NVI                    +G+GM++ I  +GP M+ Q+Q  C EC+G GE    +        R+ +  K +  + ++KG+K
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFG-SPMDI-------FDMFFGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMK 216          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.347e-34
Identity = 84/220 (38.18%), Postives = 121/220 (55.00%), Query Frame = 2
Query:   86 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQMQHPCNECKGTGETSMTRIAGHHVRVRRSIPRKNLGGI-VEKGIK 739
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG + KL+L +NVI                    +G+GM++ I  +GP M+ Q+Q  C EC+G GE    +        R+ +  K +  + ++KG+K
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFG-SPMDI------FDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMK 217          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.347e-34
Identity = 84/220 (38.18%), Postives = 121/220 (55.00%), Query Frame = 2
Query:   86 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQMQHPCNECKGTGETSMTRIAGHHVRVRRSIPRKNLGGI-VEKGIK 739
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG + KL+L +NVI                    +G+GM++ I  +GP M+ Q+Q  C EC+G GE    +        R+ +  K +  + ++KG+K
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFG-SPMDI------FDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMK 217          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.065e-34
Identity = 84/220 (38.18%), Postives = 121/220 (55.00%), Query Frame = 2
Query:   86 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQMQHPCNECKGTGETSMTRIAGHHVRVRRSIPRKNLGGI-VEKGIK 739
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG + KL+L +NVI                    +G+GM++ I  +GP M+ Q+Q  C EC+G GE    +        R+ +  K +  + ++KG+K
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFG-SPMDI------FDMFFGGGGRMQRERRGKNVVHQLTVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMK 217          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNJA1_RAT (DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.229e-34
Identity = 83/220 (37.73%), Postives = 121/220 (55.00%), Query Frame = 2
Query:   86 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQMQHPCNECKGTGETSMTRIAGHHVRVRRSIPRKNLGGI-VEKGIK 739
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVL+D +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG + KL+L +NVI                    +G+GM++ I  +GP M+ Q+Q  C EC+G GE    +        R+ +  K +  + ++KG+K
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQAIKEGGAGGGFG-SPMDI------FDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMK 217          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNJA1_MOUSE (DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.229e-34
Identity = 83/220 (37.73%), Postives = 121/220 (55.00%), Query Frame = 2
Query:   86 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQMQHPCNECKGTGETSMTRIAGHHVRVRRSIPRKNLGGI-VEKGIK 739
            T YY++LGV  NA+Q++LKKAYRK A+K HPDK   + EKFK+++QAYEVL+D +KRE+YD+ GE A+KE          P DI                       ++V+H L V+LEDLYNG + KL+L +NVI                    +G+GM++ I  +GP M+ Q+Q  C EC+G GE    +        R+ +  K +  + ++KG+K
Sbjct:    5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQAIKEGGAGGGFG-SPMDI------FDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMK 217          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: MAS5_YEAST (Mitochondrial protein import protein MAS5 OS=Saccharomyces cerevisiae GN=YDJ1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.085e-28
Identity = 68/190 (35.79%), Postives = 94/190 (49.47%), Query Frame = 2
Query:   86 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQMQHPCNECKGTGE 646
            TK+Y+ILGV   A+  ++KKAYRK A+K HPDK    E   KFKE + AYE+LSDP+KR+IYDQ+GED L             F                         +D+ H +  SLE+LY G + KL+L++ ++                     G G+K   R +GP MI + Q  C+ C GTG+
Sbjct:    5 TKFYDILGVPVTATDVEIKKAYRKCALKYHPDKNPSEEAAEKFKEASAAYEILSDPEKRDIYDQFGEDGLSGAGGAGGFPGGGFGFGDDIFSQFFGAGGAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVCHGTGD 193          

HSP 2 Score: 25.0238 bits (53), Expect = 7.085e-28
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  649 INDKDRWPPCKGEKVDPEKK 708
            I+ KDR   C G+KV+ E+K
Sbjct:  195 IDPKDRCKSCNGKKVENERK 214          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.035e-27
Identity = 71/189 (37.57%), Postives = 99/189 (52.38%), Query Frame = 2
Query:   86 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQMQHPCNECKGTGET 649
            TK YE+L V   ASQ +LKKAYRK A+K HPDK  +  +KFKE+++AYE+L+D +KR  YD++GE+ L+        + D                           +D++H +KV+LEDLY G + KL+L + VI                     GSG+K   R +GP MI +MQ  C +C G GET
Sbjct:    5 TKLYEVLNVDVTASQAELKKAYRKLALKYHPDKNPNAGDKFKEISRAYEILADEEKRATYDRFGEEGLQGGGADGGMSADDL----FASFFGGGMFGGGMPRGPRKGKDLVHTIKVTLEDLYRGKTTKLALQKKVICPKCSGRGGKEGSVKSCASCNGSGVKFITRAMGP-MIQRMQMTCPDCNGAGET 188          

HSP 2 Score: 22.7126 bits (47), Expect = 2.035e-27
Identity = 10/25 (40.00%), Postives = 13/25 (52.00%), Query Frame = 1
Query:  634 GYWRNINDKDRWPPCKGEKVDPEKK 708
            G    I D+DR   C G KV  ++K
Sbjct:  184 GAGETIRDEDRCKECDGAKVISQRK 208          
The following BLAST results are available for this feature:
BLAST of EY728479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJA2_BOVIN1.769e-3642.33DnaJ homolog subfamily A member 2 OS=Bos taurus GN... [more]
DNJA4_HUMAN1.625e-3540.00DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
DNJA1_PONAB2.347e-3438.18DnaJ homolog subfamily A member 1 OS=Pongo abelii ... [more]
DNJA1_HUMAN2.347e-3438.18DnaJ homolog subfamily A member 1 OS=Homo sapiens ... [more]
DNAJ1_CERAE2.347e-3438.18DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNJA1_BOVIN3.065e-3438.18DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]
DNJA1_RAT5.229e-3437.73DnaJ homolog subfamily A member 1 OS=Rattus norveg... [more]
DNJA1_MOUSE5.229e-3437.73DnaJ homolog subfamily A member 1 OS=Mus musculus ... [more]
MAS5_YEAST7.085e-2835.79Mitochondrial protein import protein MAS5 OS=Sacch... [more]
MAS5_SCHPO2.035e-2737.57Mitochondrial protein import protein mas5 OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-C12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728479 ID=EY728479; Name=EY728479; organism=Citrus sinensis; type=EST; length=803bp
CCACGCGTCCGCGCGTCTACTCTGAAGATCTGAAATTTTTTAGTACAAGA
AGATGTTCGGAAGAGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAG
ATTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTA
TAGGAAAGCCGCCATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGA
AGTTTAAAGAGTTGGCACAAGCGTATGAGGTTCTGAGTGACCCACAGAAG
CGTGAAATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGG
TGGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTCG
GTGGCAGCCCATTTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGG
GGAGAGGACGTAATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAA
TGGGACATCTAANAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGT
GCAAAGGGAAGGGGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGC
CAGGGATCTGGAATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGAT
TCANCAAATGCAGCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAT
CAATGACAAGGATCGCTGGCCACCATGTAAGGGTGAGAAGGTCGATCCCG
AGAAAAAATCTTGGAGGTATTGTTGAAAAGGGGATCAAATGGACNAAAAT
ACTTCCTCGAAACTGAGAACGCCCACCGCCCGTGACTGTTTGTCTCACAA
AGA
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