EY728479

Overview
NameEY728479
Unique NameEY728479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728479_ssr299 microsatellite EY728479_ssr299:299..313. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:77..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLA (Chaperone protein dnaJ OS=Lactococcus lactis subsp. lactis GN=dnaJ PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.607e-17
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 2
Query:   80 DNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPQKREIYDQYGE 277
            +NT+YYE LGV KNASQD++KKAYRK + K HPD   + G  EK+KE+ +AYE LSD QKR  YDQYGE
Sbjct:    2 NNTEYYERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEEKYKEVQEAYETLSDEQKRAAYDQYGE 70          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNAJ_PICTO (Chaperone protein dnaJ OS=Picrophilus torridus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.405e-17
Identity = 66/207 (31.88%), Postives = 83/207 (40.10%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPQKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXE---DVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIXQM-------------QHPCNECKGTGETS 652
            YY ILGV +NASQDD+KKA+R+ A K HPD         EKFKE+A+AYEVLSDPQKR+ YD+ G                 FD                        +   D+   + +SLED Y G S  +   RN +                     GSG +   R  G   +  +             Q PC  C GTG  S
Sbjct:    5 YYAILGVDRNASQDDIKKAFRELAKKYHPDANPGNKEAEEKFKEIAEAYEVLSDPQKRKQYDETGTTDFNAGSGFNWQDFTHFDDINDIFNQFFGGNFGDTFFGGYTNQPDLDIYLRVNISLEDAYYGASKNVKYRRNAMCEHCSGTGAENKVLITCPTCHGSGQERITRGQGFFRMVTVTECRTCHGRGKIPQKPCTVCHGTGTVS 211          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNJB6_XENTR (DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 2
Query:   89 KYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPQKREIYDQYGEDAL 286
            +YY++LGV +NAS +D+KKAYRK A+K HPDK  D       +FKE+A+AYEVLSD +KR+IYD+YG++ L
Sbjct:    3 EYYDVLGVQRNASPEDIKKAYRKLALKWHPDKNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYDKYGKEGL 73          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNAJ_SACD2 (Chaperone protein dnaJ OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 66/206 (32.04%), Postives = 88/206 (42.72%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPQKREIYDQYGEDAL--KEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSXKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKV-------SIRHLGPSMIXQ---MQHPCNECKGTGETSMTR 661
            YYE+LGVSK+ S  +LKKAYRK A+K HPD+  D     +KFKE ++AYEVLSD QKR  YDQYG   +           A +  DI                        D+ + L +SLED   GT+ K+ +   V                      G   +V       S++   P+   Q   +  PC EC G G    T+
Sbjct:    6 YYEVLGVSKDVSPQELKKAYRKVAMKYHPDRNSDDPNSEDKFKEASEAYEVLSDAQKRAAYDQYGHAGVDGNAGMGGGAGAGNFSDIFGDVFGDIFGGGGGRRRGGPSRGSDLRYTLDLSLEDAVKGTTVKIRVPTLVSCKPCGGSGAKPGTSPQTCTTCGGHGQVRMQQGFFSVQQTCPNCRGQGKMITDPCKECHGHGRVEETK 211          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNAJ_IDILO (Chaperone protein dnaJ OS=Idiomarina loihiensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 41/71 (57.75%), Postives = 59/71 (83.10%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 292
            +Y++LGVSK+A++ D+KKAY++ A+K HPD+  GD +   KFKE+ QAYEVLSDPQKR++YDQYG +A ++
Sbjct:    6 FYQVLGVSKDANERDIKKAYKRMAMKYHPDRTEGDKDMEIKFKEIKQAYEVLSDPQKRQMYDQYGHEAFEQ 76          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSL (Chaperone protein dnaJ OS=Geobacter sulfurreducens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   77 SDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPQKREIYDQYG 274
            +D   YYE+LGV KNAS  ++KKA+RK AI+ HPDK  D     EKFKE+ +AYEVLSDPQKR  YDQ+G
Sbjct:    3 ADKRDYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKRAQYDQFG 72          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLFF (Chaperone protein dnaJ OS=Chlamydophila felis (strain Fe/C-56) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGED 280
            YY++LGVSK AS +++KKAYRK A+K HPDK  GD E   +FKE+++AYEVLSD QKRE YD+YG+D
Sbjct:    3 YYDVLGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLCV (Chaperone protein dnaJ OS=Chlamydophila caviae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGED 280
            YY++LGVSK AS +++KK+YRK A+K HPDK  GD E   +FKE+++AYEVLSDPQKRE YD+YG++
Sbjct:    3 YYDVLGVSKTASPEEIKKSYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDPQKRESYDRYGKN 69          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBP (Chaperone protein dnaJ OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.808e-17
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPQKREIYDQYGE 277
            YYE+LGVSK AS D++K AYRK AIK HPDK  GD    EKFKE  +AYEVL DPQKR+ YDQ+G+
Sbjct:    6 YYEVLGVSKGASDDEIKSAYRKLAIKYHPDKNKGDKEAEEKFKEATEAYEVLRDPQKRQAYDQFGK 71          
BLAST of EY728479 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBA (Chaperone protein dnaJ OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.808e-17
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPQKREIYDQYGE 277
            YYE+LGVSK AS D++K AYRK AIK HPDK  GD    EKFKE  +AYEVL DPQKR+ YDQ+G+
Sbjct:    6 YYEVLGVSKGASDDEIKSAYRKLAIKYHPDKNKGDKEAEEKFKEATEAYEVLRDPQKRQAYDQFGK 71          
The following BLAST results are available for this feature:
BLAST of EY728479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_LACLA2.607e-1763.77Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_PICTO3.405e-1731.88Chaperone protein dnaJ OS=Picrophilus torridus GN=... [more]
DNJB6_XENTR4.447e-1757.75DnaJ homolog subfamily B member 6 OS=Xenopus tropi... [more]
DNAJ_SACD24.447e-1732.04Chaperone protein dnaJ OS=Saccharophagus degradans... [more]
DNAJ_IDILO4.447e-1757.75Chaperone protein dnaJ OS=Idiomarina loihiensis GN... [more]
DNAJ_GEOSL4.447e-1761.43Chaperone protein dnaJ OS=Geobacter sulfurreducens... [more]
DNAJ_CHLFF4.447e-1764.18Chaperone protein dnaJ OS=Chlamydophila felis (str... [more]
DNAJ_CHLCV4.447e-1762.69Chaperone protein dnaJ OS=Chlamydophila caviae GN=... [more]
DNAJ_LEPBP5.808e-1766.67Chaperone protein dnaJ OS=Leptospira biflexa serov... [more]
DNAJ_LEPBA5.808e-1766.67Chaperone protein dnaJ OS=Leptospira biflexa serov... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-C12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728479 ID=EY728479; Name=EY728479; organism=Citrus sinensis; type=EST; length=803bp
CCACGCGTCCGCGCGTCTACTCTGAAGATCTGAAATTTTTTAGTACAAGA
AGATGTTCGGAAGAGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAG
ATTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTA
TAGGAAAGCCGCCATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGA
AGTTTAAAGAGTTGGCACAAGCGTATGAGGTTCTGAGTGACCCACAGAAG
CGTGAAATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGG
TGGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTCG
GTGGCAGCCCATTTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGG
GGAGAGGACGTAATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAA
TGGGACATCTAANAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGT
GCAAAGGGAAGGGGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGC
CAGGGATCTGGAATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGAT
TCANCAAATGCAGCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAT
CAATGACAAGGATCGCTGGCCACCATGTAAGGGTGAGAAGGTCGATCCCG
AGAAAAAATCTTGGAGGTATTGTTGAAAAGGGGATCAAATGGACNAAAAT
ACTTCCTCGAAACTGAGAACGCCCACCGCCCGTGACTGTTTGTCTCACAA
AGA
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