EY728471

Overview
NameEY728471
Unique NameEY728471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.182e-12
Identity = 35/106 (33.02%), Postives = 55/106 (51.89%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDP 422
            G ++   +  C  + L   PRL+E +Y  E++ P DSL  +Y +++ RR  VL++    GS L+   A +PV +S GF  +LR  T           HW+ +P DP
Sbjct:  819 GQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDP 924          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: EF2_SACKL (Elongation factor 2 OS=Saccharomyces kluyveri GN=EFT2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.182e-12
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDP 422
            G ++  ++ A     L  +P++ E ++  E+  P  ++  +Y V++ +R +V+ EE   G+ LFT  AYLPV+ES GF  ELR+ T           HW  L  DP
Sbjct:  703 GQIIPTMRRATYAGFLLAEPKIQEPVFLVEIQCPEQAVGGIYSVLNRKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGTDP 808          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: EF2_PICPA (Elongation factor 2 OS=Pichia pastoris GN=EFT1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDP 422
            G V+  +K     A L  +P + E ++  E+  P +++  +Y V++ +R +V+ EE   G+ LFT  AYLPV+ES GF  ELR+ T           HW  +  +P
Sbjct:  703 GQVIPTMKRVTYAAFLLAEPAIQEPIFLVEIQCPENAIGGIYSVLNKKRGQVISEEQRPGTPLFTVKAYLPVNESFGFTGELRQATAGQAFPQMVFDHWANMNGNP 808          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: EF2_CANAL (Elongation factor 2 OS=Candida albicans GN=EFT2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.304e-11
Identity = 32/105 (30.48%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPED 419
            G ++  ++     ++L  +P + E ++  E+  P +++  +Y V++ +R +V+ EE   G+ LFT  AYLPV+ES GF  ELR+ T           HW+ +  D
Sbjct:  703 GQIIPTMRRVTYASMLLAEPAIQEPVFLVEIQCPENAIGGIYSVLNKKRGQVISEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQLIFDHWQVMSGD 807          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: EF2_CHLKE (Elongation factor 2 OS=Chlorella kessleri PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 34/106 (32.08%), Postives = 52/106 (49.06%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDP 422
            G ++   + +   A L  +PRL+E +Y  E+  P  ++  +Y V++ +R  V +E    G+ +F   AYLPV ES GF   LR  T           HWE +  DP
Sbjct:  706 GQIIPTARRSMYAAQLTAQPRLLEPVYLVEIQCPEQAMGGVYSVLNQKRGMVFEELQRPGTPIFNLKAYLPVIESFGFTSTLRAATAGQAFPQCVFDHWEAMGSDP 811          
The following BLAST results are available for this feature:
BLAST of EY728471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
SN114_SCHPO8.182e-1233.02114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_SACKL8.182e-1233.02Elongation factor 2 OS=Saccharomyces kluyveri GN=E... [more]
EF2_PICPA1.396e-1133.02Elongation factor 2 OS=Pichia pastoris GN=EFT1 PE=... [more]
EF2_CANAL5.304e-1130.48Elongation factor 2 OS=Candida albicans GN=EFT2 PE... [more]
EF2_CHLKE9.047e-1132.08Elongation factor 2 OS=Chlorella kessleri PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-C01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728471 ID=EY728471; Name=EY728471; organism=Citrus sinensis; type=EST; length=860bp
CACGCGTCCGGGCTTTTATTGTTGAGGCTTACATCTCTCCTGTGGCTGGG
AAATATGTTGACTCTGAAACTTCCCAACAATCTGAGCAGCATGGCATCTT
CTCTGGGGCAGTTATGACAGCTGTTAAAGATGCATGTATACAAGCTGTGC
TCAAAAAGAAACCCCGACTTGTTGAAACCATGTATTTTTGTGAGTTGAAC
ACACCGGTTGATTCTTTGAGTAAAATGTATGGAGTGGTTTCCCCAAGGCG
GGCTCGGGTGCTGAAGGAGGAAATGCTGGAAGGTTCTGCACTTTTCACGG
GGCATGCTTATTTGCCTGTTTCTGAAAGTATTGGTTTTGCTGATGAGCTT
AGGAAAGAAACCTCTGGTGCTGCAAGTGCTCTTCTTGCCCTTAGCCACTG
GGAAGAACTTCCTGAGGATCCTTTCTTTGTACCCGAAACAGGGGAGGACA
GAGGAGAGCATGGAGATGGGTTCTAGTGTGCTGTCGCATACGGCGGGAGA
ACGCCTGGATGCTGTGAGGGACCGAGCGGCTTACGTGTCGGGCCATCGGT
ATGGAGCAGGGACCTACGCACAGGACGCTGGCGCGCAGACTCTGAAAGGT
GGGTGAACGGGGAGTGTGCATCGGCGTCTAACCGAAGAGCGTAAAACAGC
ATAGGTCACCCCGTCACTGCCTCAAACAGTGGGCGCCTAGCGGCGCGGCC
GGAACTGACGTATTGCTATGGCATGGAGAATCCTTGTGAGGGGGGGGTCC
GCGCCGCGCAGGCACAGAAGGGGAGCGGGTGTCTGGGCGAGCGGCGGACG
TGTCGGCGCCGCGCGCCTAGGCTCGCGCCGGCCTGGTGGAGGGGCGACGG
CGTGGCAACG
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