EY728470

Overview
NameEY728470
Unique NameEY728470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_STAES (GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.483e-19
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   37 LNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQ 420
            LN ++E  E    +  ++EF++++  DL   +V+ FTP  ++  LP GA  +D+AY IH+E+GNKM+ AKVNG +V   +VL   +++EI T     SK ++   + WL+  K+ SA+ KI  F ++Q
Sbjct:  363 LNWLKELAETDHTSADAQEFMESLKYDLQSDKVYAFTPASDVIELPYGAVPIDFAYAIHSEVGNKMIGAKVNGKIVPIDYVLQTGDIIEIRT-----SKHSYGPSRDWLKIVKSSSAKSKIKSFFKKQ 485          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_STAEQ (GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.483e-19
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   37 LNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQ 420
            LN ++E  E    +  ++EF++++  DL   +V+ FTP  ++  LP GA  +D+AY IH+E+GNKM+ AKVNG +V   +VL   +++EI T     SK ++   + WL+  K+ SA+ KI  F ++Q
Sbjct:  363 LNWLKELAETDHTSADAQEFMESLKYDLQSDKVYAFTPASDVIELPYGAVPIDFAYAIHSEVGNKMIGAKVNGKIVPIDYVLQTGDIIEIRT-----SKHSYGPSRDWLKIVKSSSAKSKIKSFFKKQ 485          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_STRCO (GTP pyrophosphokinase OS=Streptomyces coelicolor GN=relA PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.529e-19
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 1
Query:   28 ISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTV 459
            ++WL  + +WQ+E        EF++++  DL  + VFVFTP+G++  LP GAT VD+AY +HTE+G++ + A+VNG LV     L N ++VE+ T  A  +  +    + WL   K+  AR+KI  +  ++    A E   D +
Sbjct:  473 MAWLRQLLDWQKE---TEDPGEFLESLRFDLSRNEVFVFTPKGDVIALPAGATPVDFAYAVHTEVGHRTIGARVNGRLVPLESTLDNGDLVEVFTSKAAGAGPS----RDWLGFVKSPRARNKIRAWFSKERRDEAIEQGKDAI 609          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_MYCTU (Probable GTP pyrophosphokinase OS=Mycobacterium tuberculosis GN=relA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.358e-19
Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    1 HASADAWVRISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSG 483
            HA+A+    ++W+  + +WQ E        EF++++  DL    +FVFTP+G++  LP G+T VD+AY +HTE+G++ + A+VNG LV+    L N EVVE+ T  A ++  +    + W +   +  A+ KI ++  ++    A E   D +   V   G
Sbjct:  412 HAAAEI-DDMAWMRQLLDWQREAAD---PGEFLESLRYDLAVQEIFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEVFTSKAPNAGPS----RDWQQFVVSPRAKTKIRQWFAKERREEALETGKDAMAREVRRGG 564          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_MYCBO (Probable GTP pyrophosphokinase OS=Mycobacterium bovis GN=relA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.358e-19
Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    1 HASADAWVRISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSG 483
            HA+A+    ++W+  + +WQ E        EF++++  DL    +FVFTP+G++  LP G+T VD+AY +HTE+G++ + A+VNG LV+    L N EVVE+ T  A ++  +    + W +   +  A+ KI ++  ++    A E   D +   V   G
Sbjct:  412 HAAAEI-DDMAWMRQLLDWQREAAD---PGEFLESLRYDLAVQEIFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEVFTSKAPNAGPS----RDWQQFVVSPRAKTKIRQWFAKERREEALETGKDAMAREVRRGG 564          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_STRAT (GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.255e-18
Identity = 50/144 (34.72%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   28 ISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTV 459
            ++WL  + +WQ+E        EF++++  DL  + VFVFTP+ ++  LP GAT VD+AY +HTE+G++ + A+VNG LV     L N ++VE+ T  A  +  +    + WL   K+  AR+KI  +  ++    A E   D +
Sbjct:  469 MAWLRQLLDWQKE---TEDPGEFLESLRFDLSRNEVFVFTPKSDVIALPAGATPVDFAYAVHTEVGHRTIGARVNGRLVPLESTLDNGDLVEVFTSKAAGAGPS----RDWLGFVKSPRARNKIRAWFSKERRDEAIEQGKDAI 605          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_MYCLE (Probable GTP pyrophosphokinase OS=Mycobacterium leprae GN=relA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.141e-18
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 1
Query:    1 HASADAWVRISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSG 483
            HA+A+    ++W+  + +WQ E        EF++++  DL    +FVFTP+G++  LP G+T VD+AY +HTE+G++ + A+VNG LV+    L N E VEI T  A ++  +    + W +   +  A+ KI ++  ++    A E   D +   V   G
Sbjct:  409 HAAAEI-DDMAWMRQLLDWQREAA---EPGEFLESLRYDLAVQEIFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEFVEIFTSKAPNAGPS----RDWQQFVVSPRAKTKIRQWFAKERREEALEAGKDAMAREVRRGG 561          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: SPOT_SYNY3 (Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803) GN=spoT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.229e-18
Identity = 50/150 (33.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   25 RISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFL----REQAALSASEITADTVG 462
            + +WL  + +WQ +      ++E+V+ + ++L    V+VFTP+GE+ +L +GAT VD+AY IHTE+G+ M  A+VNG  +     L N ++VEI+T      +        WL    T SARH+I ++     R++  L   E+    +G
Sbjct:  390 KFTWLRQLLDWQSDL---KDAQEYVENLKQNLFDDDVYVFTPKGEVISLARGATPVDFAYRIHTEVGHHMKGARVNGQWLGVDTRLKNGDIVEIVT------QKNSHPSLDWLNFVVTPSARHRIRQWFKRSRRDENILRGRELLEKELG 530          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: SPOT_BORBU (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Borrelia burgdorferi GN=spoT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.367e-17
Identity = 48/130 (36.92%), Postives = 82/130 (63.08%), Query Frame = 1
Query:   28 ISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLRE 417
            +S++N I++WQ+E      S+  ++ I ++LL + ++V+TP GE+  LP G+  +D+AY+IHT+IG++ + AK+NG + S T  L N ++VEI T     SK + +    WL   +T+ AR KI  +L +
Sbjct:  370 LSFINRIKKWQQESANK--SQYSMNDIHKELLNTFIYVYTPEGEVVELPFGSNSIDFAYIIHTDIGDQALYAKINGKISSITKPLKNEQIVEIFT-----SKDS-KPDVIWLNSVRTKKARSKIRSWLNK 491          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_CORGL (GTP pyrophosphokinase OS=Corynebacterium glutamicum GN=relA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 49/162 (30.25%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    1 HASADAWV-RISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSG 483
            H+   A V +++W+  + +WQ+E        EF+D++  DL   ++FVFTP+G++ NLP  +T VD+AY +HTE+G++ + AK+NG LV+    L + + VE+ T    S        + W E   +  A+ KI ++  ++      E   D +   +   G
Sbjct:  378 HSGEQAEVDQMAWMRQLLDWQKEAAD---PNEFLDSLRYDLTSKQIFVFTPKGDVVNLPVNSTPVDFAYAVHTEVGHRCIGAKINGKLVALETKLKSGDRVEVFT----SKDQNAGPSRGWQEFVVSPRAKAKIRQWFAKERREEYLEAGRDALAAVIQRGG 532          
The following BLAST results are available for this feature:
BLAST of EY728470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RELA_STAES1.483e-1937.50GTP pyrophosphokinase OS=Staphylococcus epidermidi... [more]
RELA_STAEQ1.483e-1937.50GTP pyrophosphokinase OS=Staphylococcus epidermidi... [more]
RELA_STRCO2.529e-1935.42GTP pyrophosphokinase OS=Streptomyces coelicolor G... [more]
RELA_MYCTU7.358e-1932.30Probable GTP pyrophosphokinase OS=Mycobacterium tu... [more]
RELA_MYCBO7.358e-1932.30Probable GTP pyrophosphokinase OS=Mycobacterium bo... [more]
RELA_STRAT1.255e-1834.72GTP pyrophosphokinase OS=Streptomyces antibioticus... [more]
RELA_MYCLE2.141e-1832.30Probable GTP pyrophosphokinase OS=Mycobacterium le... [more]
SPOT_SYNY36.229e-1833.33Probable guanosine-3',5'-bis(diphosphate) 3'-pyrop... [more]
SPOT_BORBU2.367e-1736.92Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
RELA_CORGL4.037e-1730.25GTP pyrophosphokinase OS=Corynebacterium glutamicu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-B12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728470 ID=EY728470; Name=EY728470; organism=Citrus sinensis; type=EST; length=892bp
CACGCGTCCGCGGACGCGTGGGTGAGGATTAGCTGGCTCAATGCAATTAG
AGAATGGCAAGAAGAGTTCGTGGGCAACATGACATCTAGAGAATTTGTAG
ATACCATTACAAGAGATCTCTTATGTAGTCGAGTCTTCGTTTTTACGCCA
AGGGGAGAGATTAAAAATCTGCCTAAAGGAGCGACAGTTGTTGACTATGC
TTACATGATACACACTGAAATTGGCAACAAGATGGTTGCTGCAAAGGTCA
ATGGGAATCTTGTTTCTCCAACACATGTGCTTGCCAATGCTGAAGTTGTG
GAGATAATCACCTATAATGCGCTCTCAAGTAAATCAGCTTTCCAAAGGCA
TAAGCAGTGGTTGGAACATGCTAAAACACGAAGTGCCAGACACAAAATTA
TGAAGTTTTTAAGGGAGCAAGCTGCACTATCTGCTTCAGAAATTACAGCA
GATACTGTAGGTGACTTCGTTGCTGATTCTGGAGAGGAGAGTGAAGTATA
AGATCTCTCAGATGGTTCCGAACAGGACAAACCTTTGTGGGAGAAAATCT
TATGAATGTTGTCCAAATGTGCGTCACTGTCAGAAATTCTAAAGCTGTCT
GTTCTGATGACAATGCTAGCCTTTGGGCTCCACAAGTTCACGGAAAACAT
AACAAGCGTGTGCATTATGTTGGTTCAAAAGCTGAGGGGGGAGTTGTCAT
CTCAAGAACATAGTTTTGCCAAATGATGCATGCTACTGTTCCAATGTATA
GGGAAATTTGCCCGGATTATAAACTGGCAACCCGTTAAATGCGGTTTGGC
CAACTGGAGGGGCCCCTATCCAAGGTTAATGTGGGTGGTAAACCAAAAGG
GTCCTGGGTGACTCCAAGGCATGGGACTGTTGGGGGACCAAA
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