EY728470

Overview
NameEY728470
Unique NameEY728470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_SHIFL (GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.418e-16
Identity = 46/136 (33.82%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   25 RISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLE----HAKTRSARHKIMKFLREQ 420
            RI+WL  +  WQEE      S E +D +   +   RV+VFTP+G++ +LP G+T +D+AY IH+++G++ + AK+ G +V  T+ L   + +EIIT    +        + WL     +  T   R KI  + R+Q
Sbjct:  373 RIAWLRKLIAWQEEMAD---SGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPS------RDWLNPNLGYVTTSRGRSKIHAWFRKQ 499          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_ECOLI (GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.418e-16
Identity = 46/136 (33.82%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   25 RISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLE----HAKTRSARHKIMKFLREQ 420
            RI+WL  +  WQEE      S E +D +   +   RV+VFTP+G++ +LP G+T +D+AY IH+++G++ + AK+ G +V  T+ L   + +EIIT    +        + WL     +  T   R KI  + R+Q
Sbjct:  373 RIAWLRKLIAWQEEMAD---SGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPS------RDWLNPNLGYVTTSRGRSKIHAWFRKQ 499          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_ECOL6 (GTP pyrophosphokinase OS=Escherichia coli O6 GN=relA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.418e-16
Identity = 46/136 (33.82%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   25 RISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLE----HAKTRSARHKIMKFLREQ 420
            RI+WL  +  WQEE      S E +D +   +   RV+VFTP+G++ +LP G+T +D+AY IH+++G++ + AK+ G +V  T+ L   + +EIIT    +        + WL     +  T   R KI  + R+Q
Sbjct:  373 RIAWLRKLIAWQEEMAD---SGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPS------RDWLNPNLGYVTTSRGRSKIHAWFRKQ 499          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_ECO57 (GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.418e-16
Identity = 46/136 (33.82%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   25 RISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLE----HAKTRSARHKIMKFLREQ 420
            RI+WL  +  WQEE      S E +D +   +   RV+VFTP+G++ +LP G+T +D+AY IH+++G++ + AK+ G +V  T+ L   + +EIIT    +        + WL     +  T   R KI  + R+Q
Sbjct:  373 RIAWLRKLIAWQEEMAD---SGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPS------RDWLNPNLGYVTTSRGRSKIHAWFRKQ 499          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: SPOT_VIBCH (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Vibrio cholerae GN=spoT PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   34 WLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLR 414
            W+ ++ E Q+   GN  S EF++ +  DL    ++VFTP+G I  LP GAT VD+AY +HT+IGN  V A+V+      +  L + + VEII+       +A      WL +  T  AR KI + L+
Sbjct:  359 WMQSLLELQQS-AGN--SFEFIENVKSDLFPDEIYVFTPKGRIVELPMGATAVDFAYAVHTDIGNTCVGARVDRTPYPLSQSLKSGQTVEIISAPGARPNAA------WLNYVVTSRARTKIRQVLK 476          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_PHOAS (GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG 15956) GN=relA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.446e-15
Identity = 46/136 (33.82%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   25 RISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLE----HAKTRSARHKIMKFLREQ 420
            +I+WL  +  WQEE      S E +D +   +   RV+ FTP+G++ +LP  AT +D+AY IH+E+G++ + AKV G +V  T+ L   + VEIIT    +        + WL        +  AR K+  + R+Q
Sbjct:  372 KINWLRKLLAWQEEM---SDSGEMLDELRSQVFDDRVYAFTPKGDVVDLPSNATPLDFAYHIHSEVGHRCIGAKVEGRIVPFTYHLQMGDQVEIITQKEPNPS------RDWLNPNLGFVTSSRARAKVHAWFRKQ 498          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: SPOT_SPICI (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Spiroplasma citri GN=spoT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.875e-14
Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  106 ITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITAD 453
            I  D+  S ++V TP G++  LP G+TV+D+AY IH+EIG K + AK+NG     + VL + +VV+I T  A + K     +  WL  +KT SA  KI K+L+++      E+T+D
Sbjct:  400 IQNDIFSSLIYVLTPNGKVVTLPFGSTVLDFAYKIHSEIGEKTIGAKINGLFSPISTVLKSGDVVDIKT--AATQKP----NHSWLVVSKTSSALEKIKKYLKKELV----EVTSD 505          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: RELA_HAEIN (GTP pyrophosphokinase OS=Haemophilus influenzae GN=relA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.199e-14
Identity = 43/132 (32.58%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   25 RISWLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQ 420
            +I+WL  +  WQ++      S E +  +   +   RV+VFTP+GE+ +LP G+T +D+AY IH+EIG++ + AKV G +V  T+ L   + ++IIT    +    +        H  T  +R KI  + ++Q
Sbjct:  373 KIAWLRKLLAWQDDITD---SGEVLAELRSQVFDDRVYVFTPKGEVVDLPTGSTPLDFAYAIHSEIGHRCIGAKVAGRIVPFTYQLQMGDQIDIITQKNPNPSRDWLNPNLGFTH--TAKSRAKIQAWFKKQ 499          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: SPOT_SHIFL (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Shigella flexneri GN=spoT PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.216e-13
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 1
Query:   34 WLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLR 414
            W+ ++ E Q+      +S EF++++  DL    ++VFTP G I  LP GAT VD+AY +HT+IG+  V A+V+      +  L + + VEIIT       +A      WL    +  AR KI + L+
Sbjct:  358 WMQSLLELQQSAG---SSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPGARPNAA------WLNFVVSSKARAKIRQLLK 475          
BLAST of EY728470 vs. ExPASy Swiss-Prot
Match: SPOT_ECOLI (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Escherichia coli (strain K12) GN=spoT PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.216e-13
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 1
Query:   34 WLNAIREWQEEFVGNMTSREFVDTITRDLLCSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLR 414
            W+ ++ E Q+      +S EF++++  DL    ++VFTP G I  LP GAT VD+AY +HT+IG+  V A+V+      +  L + + VEIIT       +A      WL    +  AR KI + L+
Sbjct:  358 WMQSLLELQQSAG---SSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPGARPNAA------WLNFVVSSKARAKIRQLLK 475          
The following BLAST results are available for this feature:
BLAST of EY728470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RELA_SHIFL3.418e-1633.82GTP pyrophosphokinase OS=Shigella flexneri GN=relA... [more]
RELA_ECOLI3.418e-1633.82GTP pyrophosphokinase OS=Escherichia coli (strain ... [more]
RELA_ECOL63.418e-1633.82GTP pyrophosphokinase OS=Escherichia coli O6 GN=re... [more]
RELA_ECO573.418e-1633.82GTP pyrophosphokinase OS=Escherichia coli O157:H7 ... [more]
SPOT_VIBCH3.779e-1537.01Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
RELA_PHOAS6.446e-1533.82GTP pyrophosphokinase OS=Photobacterium angustum (... [more]
SPOT_SPICI1.875e-1439.66Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
RELA_HAEIN3.199e-1432.58GTP pyrophosphokinase OS=Haemophilus influenzae GN... [more]
SPOT_SHIFL1.216e-1334.65Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
SPOT_ECOLI1.216e-1334.65Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-B12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728470 ID=EY728470; Name=EY728470; organism=Citrus sinensis; type=EST; length=892bp
CACGCGTCCGCGGACGCGTGGGTGAGGATTAGCTGGCTCAATGCAATTAG
AGAATGGCAAGAAGAGTTCGTGGGCAACATGACATCTAGAGAATTTGTAG
ATACCATTACAAGAGATCTCTTATGTAGTCGAGTCTTCGTTTTTACGCCA
AGGGGAGAGATTAAAAATCTGCCTAAAGGAGCGACAGTTGTTGACTATGC
TTACATGATACACACTGAAATTGGCAACAAGATGGTTGCTGCAAAGGTCA
ATGGGAATCTTGTTTCTCCAACACATGTGCTTGCCAATGCTGAAGTTGTG
GAGATAATCACCTATAATGCGCTCTCAAGTAAATCAGCTTTCCAAAGGCA
TAAGCAGTGGTTGGAACATGCTAAAACACGAAGTGCCAGACACAAAATTA
TGAAGTTTTTAAGGGAGCAAGCTGCACTATCTGCTTCAGAAATTACAGCA
GATACTGTAGGTGACTTCGTTGCTGATTCTGGAGAGGAGAGTGAAGTATA
AGATCTCTCAGATGGTTCCGAACAGGACAAACCTTTGTGGGAGAAAATCT
TATGAATGTTGTCCAAATGTGCGTCACTGTCAGAAATTCTAAAGCTGTCT
GTTCTGATGACAATGCTAGCCTTTGGGCTCCACAAGTTCACGGAAAACAT
AACAAGCGTGTGCATTATGTTGGTTCAAAAGCTGAGGGGGGAGTTGTCAT
CTCAAGAACATAGTTTTGCCAAATGATGCATGCTACTGTTCCAATGTATA
GGGAAATTTGCCCGGATTATAAACTGGCAACCCGTTAAATGCGGTTTGGC
CAACTGGAGGGGCCCCTATCCAAGGTTAATGTGGGTGGTAAACCAAAAGG
GTCCTGGGTGACTCCAAGGCATGGGACTGTTGGGGGACCAAA
back to top