EY728468

Overview
NameEY728468
Unique NameEY728468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728468_ssr491 microsatellite EY728468_ssr491:491..502. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_CHLCV (Orotate phosphoribosyltransferase OS=Chlamydophila caviae GN=pyrE PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.269e-35
Identity = 76/192 (39.58%), Postives = 120/192 (62.50%), Query Frame = 1
Query:   58 ILQLHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAI--EGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLDEETERVVMKFLE 627
            ++ L+ I A++FG+F L  G  +P+Y+D+RL++S P +L+ I+  I    PS     L+CGVPYTAL +ATC+S+  ++ M++RRKE+K       I  EG F   + CL+I D++ SG S+L+TA  L   GL + +++V +DR+ GG + LKE GI+L ++  L E+V+ L  K +L E    +    LE
Sbjct:   14 VVNLYRIGAIRFGDFILSDGKKTPIYVDMRLVISCPDVLQTIASLIWRLRPSFNS-SLLCGVPYTALTLATCISLKYNISMVLRRKELKHPNQEDKIKVEGLFSPGQTCLVINDVIASGRSILDTAKALEDEGLNIRESLVFLDRQVGGADALKEAGIKLRSVFTLEELVKALLSKCQLSETDAAIARTLLE 204          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_CHLFF (Orotate phosphoribosyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=pyrE PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.419e-32
Identity = 75/194 (38.66%), Postives = 118/194 (60.82%), Query Frame = 1
Query:   31 MSSHSMESL----ILQLHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAI--EGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLDE 594
            M+S   E L    +  L+ I A++FG+F L  G  + +Y+D+R ++S P +L+ I+  I    PS     L+CGVPYTAL +ATC+S+  ++ M++RRKE+K       I  EG F   + CL+I D++ SG S+LETA  L   GL + +++V +DR+ GG   LKE GI+L ++  L ++V+ L  K +L +
Sbjct:    1 MTSFEEEQLRDHAVANLYRIGAIRFGDFNLSDGQKTHIYVDMRPVISCPDVLQTIASLIWRLRPSFNS-SLLCGVPYTALALATCISLKYNISMVLRRKELKHSSQEDRIKVEGLFSSGQTCLVINDVIASGRSILETAKALEDEGLNIRESLVFLDRQVGGEAVLKEAGIKLRSVFTLEDLVKSLLSKCELKD 193          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_CHLPN (Orotate phosphoribosyltransferase OS=Chlamydia pneumoniae GN=pyrE PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.844e-32
Identity = 71/176 (40.34%), Postives = 117/176 (66.48%), Query Frame = 1
Query:   67 LHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAI--EGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVRVLREKGKL 588
            L++I A+KFG   L SG  +P+Y+D+RL++S P +L+ ++ T+I  L  +    L+CGVPYTAL +AT +S+  ++PM++RRKE+++   + AI  EG F   + CL+I D+V+SG S++ETAV L   GLVV +A+V +DR +   + L   GI++ ++  +  +++ L   GKL
Sbjct:   17 LYQIGAIKFGKHILASGEETPLYVDMRLVISSPEVLQTVA-TLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELQNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEENGLVVREALVFLDRRKEACQPLGPQGIKVSSVFTVPTLIKALIAYGKL 191          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_PYRHO (Orotate phosphoribosyltransferase OS=Pyrococcus horikoshii GN=pyrE PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.245e-26
Identity = 63/173 (36.42%), Postives = 104/173 (60.12%), Query Frame = 1
Query:   49 ESLILQLHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTT-KYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVR 564
            + LI  +     +KFG+F L SG  S  YID++ +++ P  LR I+K I          YD + G    A+PIAT +S+  + P+L+ RK+ K++GT K IEGN +K +  L++ED+ T+G SV+  A  LR  G  V    V++DRE+G +EN+++ G + + ++ +SE+ +
Sbjct:    5 DELINLIINEGCIKFGHFVLTSGKESNYYIDIKSLITNPKALRIIAKLIKEKAEELNLNYDKIAGPELGAVPIATALSLETNKPLLIVRKKKKEHGTGKVIEGNVQKGDKVLLVEDVTTTGGSVIRAAKILREHGADVVGIFVVVDREEGAKENIEKEGFKFYPLVLVSELFK 177          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_PYRFU (Orotate phosphoribosyltransferase OS=Pyrococcus furiosus GN=pyrE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.774e-26
Identity = 62/171 (36.26%), Postives = 105/171 (61.40%), Query Frame = 1
Query:   49 ESLILQLHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPST-TKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEM 558
            E LI  + E   +KFG+F L SG  S  YID++ +++ P  LR I++ I         ++D V G    A+PIAT +++  D P+L+ RK+ K++GT + IEG  K+ +  L++ED+ T+G SVL  A  L+ AG  +T   V++DRE+G +E +++ G +L+ ++ + E+
Sbjct:    3 EELIRMILEEECIKFGHFILTSGKESSYYIDIKKLITNPKALRLIARLIKEKAEEEGIQFDKVAGPELGAVPIATALALETDRPLLIVRKKKKEHGTGRQIEGEVKEGDRVLLVEDVTTTGGSVLRAAKILKEAGAEITGIFVVVDREEGAKEAIEKEGFKLYPLVLVHEL 173          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_PYRAB (Orotate phosphoribosyltransferase OS=Pyrococcus abyssi GN=pyrE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.774e-26
Identity = 63/171 (36.84%), Postives = 104/171 (60.82%), Query Frame = 1
Query:   49 ESLILQLHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIIS-SLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEM 558
            E L+  + +   +KFG+F L SG  S  YID++ +++ P  L+ I+K I   S     +YD V G    A+PIAT +S+  D P+L+ RK+ K++GT K IEG     +  L++ED+ T+G SV+  A  L+  G  V    V++DRE+G REN+++ G +L+ ++ +S++
Sbjct:    3 EELVKLIIDSGCIKFGHFILTSGKESNYYIDIKSLITNPKALKLIAKMIKEESRKLGIEYDKVAGPELGAVPIATALSLETDKPLLIIRKKKKEHGTGKLIEGEISPGDRVLLVEDVTTTGGSVIRAAKILKEHGAEVVGIFVVVDREEGARENIEKEGFKLYPLVLVSDL 173          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_CENSY (Orotate phosphoribosyltransferase OS=Cenarchaeum symbiosum GN=pyrE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.180e-26
Identity = 66/185 (35.68%), Postives = 102/185 (55.14%), Query Frame = 1
Query:   67 LHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTT---KYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLDEETERVV 612
            LH   AVKFG+F+L  G  SP Y DLR + S+P   R + + ++ S+ S     ++D +  +P   L +A+ +++    P++  R   K +GT + +EG  +     LII+D+ T+G SV+  A  LRAAG +VTDA V+IDR +G    L   GI+LH +    E+ R L   G +  +  R V
Sbjct:   11 LHSSGAVKFGDFELSGGGRSPYYFDLRSVPSHPHQFRGMIRGLLDSVISEVGLDRFDTLASIPTGGLVVASALAIEAVKPLVYARAAAKGHGTGRTVEGIVRYGARALIIDDVATTGGSVIRAAESLRAAGAIVTDAFVVIDRMEGAEGRLGAEGIKLHRLAGALEVARSLHAAGLIPGDVMRQV 195          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_UNCMA (Orotate phosphoribosyltransferase OS=Uncultured methanogenic archaeon RC-I GN=pyrE PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.072e-26
Identity = 62/169 (36.69%), Postives = 101/169 (59.76%), Query Frame = 1
Query:   55 LILQLHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMV 561
            L+  L +  AVKFG+F L SG  S  Y+D  +  + P  L  I   I   +P+ T+   + G+   ++P+A   SV + +P ++ RK  K YGT K IEG ++K E   ++ED+VT+    L     LR AGL V + V ++DRE+GGRE+L++ G+++ +++K SE++
Sbjct:    5 LVEMLKQTGAVKFGDFTLSSGRKSTYYVDKYIFETNPVCLSVIGDRIAKLIPAGTRR--LAGIEIGSIPLAAVASVKSGMPFVVVRKATKGYGTNKLIEGVWQKGEKVFVVEDVVTTARGALGAIHTLREAGLAVDEMVCVVDREEGGRESLEQEGVKVRSLVKSSELL 171          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_NATPD (Orotate phosphoribosyltransferase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=pyrE PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.067e-25
Identity = 61/171 (35.67%), Postives = 97/171 (56.73%), Query Frame = 1
Query:   49 ESLILQLHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMV 561
            + LI  L +  AVKFG F+L  G +S  Y+D  +  + P  LRQI+      +        + GV   A+P+    +V  D P ++ RK+ K+YGT   IEG+F   E  +++ED+ T+G S ++    LR AG  V   +V++DRE+G RENL E+ IEL +++  S+++
Sbjct:    4 QELIDALRDAEAVKFGEFELSHGGTSEYYVDKYVFETDPGCLRQIADAFADRVGDAK----LAGVALGAVPLVAATAVETDSPYVIVRKQKKEYGTGNQIEGDFDAGEEVVVLEDIATTGQSAIDAVEALREAGATVDRVIVVVDREEGARENLAEHDIELESLVTASDLL 170          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_HYPBU (Orotate phosphoribosyltransferase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=pyrE PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.833e-25
Identity = 61/187 (32.62%), Postives = 112/187 (59.89%), Query Frame = 1
Query:   31 MSSHSMESLILQLHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLD 591
            M+S++++ L   L E  A++FG F+L SG +SP+YID+R++ S P L R++   +   L    + D+V GV    +  AT +++ ++ P+   R + K++G  + +EG  +   + L+++D+ T+G+S+      LR AG     A+V++DREQG  E L + G++L+++  L E++  +  KG LD
Sbjct:    1 MNSYALD-LADVLVEAGAIRFGEFRLSSGSTSPIYIDMRIVPSKPQLFRRVLGMLAEKLNDVREVDVVVGVATAGIIWATGLALLSEKPLAYVRPKRKEHGLQRVVEGIVEGRRV-LVVDDVATTGSSLASAVESLREAGAEPVAAMVIVDREQGAVERLADYGVKLYSLATLREIIHAMVVKGYLD 185          
The following BLAST results are available for this feature:
BLAST of EY728468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
PYRE_CHLCV3.269e-3539.58Orotate phosphoribosyltransferase OS=Chlamydophila... [more]
PYRE_CHLFF4.419e-3238.66Orotate phosphoribosyltransferase OS=Chlamydophila... [more]
PYRE_CHLPN9.844e-3240.34Orotate phosphoribosyltransferase OS=Chlamydia pne... [more]
PYRE_PYRHO1.245e-2636.42Orotate phosphoribosyltransferase OS=Pyrococcus ho... [more]
PYRE_PYRFU2.774e-2636.26Orotate phosphoribosyltransferase OS=Pyrococcus fu... [more]
PYRE_PYRAB2.774e-2636.84Orotate phosphoribosyltransferase OS=Pyrococcus ab... [more]
PYRE_CENSY6.180e-2635.68Orotate phosphoribosyltransferase OS=Cenarchaeum s... [more]
PYRE_UNCMA8.072e-2636.69Orotate phosphoribosyltransferase OS=Uncultured me... [more]
PYRE_NATPD3.067e-2535.67Orotate phosphoribosyltransferase OS=Natronomonas ... [more]
PYRE_HYPBU6.833e-2532.62Orotate phosphoribosyltransferase OS=Hyperthermus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-B08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728468 ID=EY728468; Name=EY728468; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCCCAAAAGGCAGAAACGCAATGTCGTCGCATTCGATGGA
GTCATTGATTCTCCAACTCCACGAGATCTCGGCGGTTAAATTCGGAAACT
TTAAGCTAAAATCCGGCATATCGTCTCCCGTTTACATCGACCTCCGACTT
ATCGTTTCGTACCCTTCCCTCCTCCGCCAAATATCCAAAACCATCATCTC
CTCCCTCCCCTCCACAACCAAATACGACCTCGTGTGCGGCGTTCCGTACA
CCGCCCTCCCAATCGCCACCTGCGTCTCCGTCTCCAACGACGTCCCCATG
CTCATGCGGCGCAAGGAAATCAAAGACTACGGCACCGCCAAGGCCATCGA
AGGCAATTTCAAGAAGGAAGAAATCTGTCTGATCATCGAAGATTTAGTCA
CCAGCGGCGCGTCGGTCCTCGAAACGGCGGTGCCATTGAGAGCGGCGGGG
CTGGTGGTGACGGACGCCGTCGTATTGATCGACAGAGAGCAGGGAGGGAG
GGAGAATCTGAAGGAGAACGGAATTGAGTTGCATGCGATGATAAAGCTGA
GCGAAATGGTTAGGGTTTTGAGGGAGAAAGGGAAGCTTGATGAGGAAACG
GAGAGAGTGGTGATGAAGTTTTTGGAGGAAAANAAGAAAGTGGCGGGTTC
GAATTTAAGTGGGGTTAGGGTTAGGGTTTAGGGTTTGAAGTACGAAAAAA
GGGCGATTTGATGAAGAATGAGACTGGGAAAAAATGTTCAAGTGATGGTG
AAAAANGAAAATAATTGTGTTTGCTGGTGATGTTGCCCTGNTGCTGAGTT
GGTCAATTTGCGAGAAGGTGGGCCAAGATCTGGTGTGGAAACCAGGTGAT
ATTTTGCTGATTCCCCGCGAATTGGTGCAANTTGTGGC
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