EY728468

Overview
NameEY728468
Unique NameEY728468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728468_ssr491 microsatellite EY728468_ssr491:491..502. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_BACLD (Orotate phosphoribosyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pyrE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 47/168 (27.98%), Postives = 74/168 (44.05%), Query Frame = 1 
Query:  100 FKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTK-YDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGL-VVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLDEE 597
            F   SGI SP+Y D RL +SYP +   I+  +   +       +++ G     +P A   +    +PM   R + K +G    IEG   K +  ++IEDL+++G SVLE A  L  AG  V+  A +             E G+E H +     +       G + E+
Sbjct:   23 FTWASGILSPIYCDNRLTLSYPEVRDDIASGLAGLIQDKFPGAEMIAGTATAGIPHAALAADRLSLPMCYVRSKPKAHGKGNQIEGAVVKGQKVVVIEDLISTGGSVLEAAAALTEAGCEVLGVAAIFTYGLPKAAAAFSEAGVEYHTLTDYDTLTEAALAGGYITEQ 190
The following BLAST results are available for this feature:
BLAST of EY728468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
PYRE_BACLD9.579e-1127.98Orotate phosphoribosyltransferase OS=Bacillus lich... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-B08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728468 ID=EY728468; Name=EY728468; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCCCAAAAGGCAGAAACGCAATGTCGTCGCATTCGATGGA
GTCATTGATTCTCCAACTCCACGAGATCTCGGCGGTTAAATTCGGAAACT
TTAAGCTAAAATCCGGCATATCGTCTCCCGTTTACATCGACCTCCGACTT
ATCGTTTCGTACCCTTCCCTCCTCCGCCAAATATCCAAAACCATCATCTC
CTCCCTCCCCTCCACAACCAAATACGACCTCGTGTGCGGCGTTCCGTACA
CCGCCCTCCCAATCGCCACCTGCGTCTCCGTCTCCAACGACGTCCCCATG
CTCATGCGGCGCAAGGAAATCAAAGACTACGGCACCGCCAAGGCCATCGA
AGGCAATTTCAAGAAGGAAGAAATCTGTCTGATCATCGAAGATTTAGTCA
CCAGCGGCGCGTCGGTCCTCGAAACGGCGGTGCCATTGAGAGCGGCGGGG
CTGGTGGTGACGGACGCCGTCGTATTGATCGACAGAGAGCAGGGAGGGAG
GGAGAATCTGAAGGAGAACGGAATTGAGTTGCATGCGATGATAAAGCTGA
GCGAAATGGTTAGGGTTTTGAGGGAGAAAGGGAAGCTTGATGAGGAAACG
GAGAGAGTGGTGATGAAGTTTTTGGAGGAAAANAAGAAAGTGGCGGGTTC
GAATTTAAGTGGGGTTAGGGTTAGGGTTTAGGGTTTGAAGTACGAAAAAA
GGGCGATTTGATGAAGAATGAGACTGGGAAAAAATGTTCAAGTGATGGTG
AAAAANGAAAATAATTGTGTTTGCTGGTGATGTTGCCCTGNTGCTGAGTT
GGTCAATTTGCGAGAAGGTGGGCCAAGATCTGGTGTGGAAACCAGGTGAT
ATTTTGCTGATTCCCCGCGAATTGGTGCAANTTGTGGC
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