EY728468

Overview
NameEY728468
Unique NameEY728468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728468_ssr491 microsatellite EY728468_ssr491:491..502. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_ARCFU (Orotate phosphoribosyltransferase OS=Archaeoglobus fulgidus GN=pyrE PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.334e-20
Identity = 54/171 (31.58%), Postives = 101/171 (59.06%), Query Frame = 1
Query:   49 ESLILQLHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMV 561
            ++L+ ++ E+ A+KFG+F L SG  S VY+D++L  ++P +L  IS+ + + L    ++D +  V    +PIA  +S+    P+++ RKE KDYG      G  K+ E  +++ED++T+G+S L  A  +  +G  V   + ++DRE+ GR  +        +++KLS+++
Sbjct:    6 DALVKRMIEVGALKFGDFVLSSGKRSRVYVDVKLASTFPDILEMISEGMAAKLKDL-EFDRIACVELGGVPIAVALSLKMKKPLVIFRKEKKDYGIKGDRIGEVKEGEKVVVVEDVITTGSSALSAARRVEESGASVAAIIAVVDREESGRNFM--------SLLKLSDLI 167          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_PICTO (Orotate phosphoribosyltransferase OS=Picrophilus torridus GN=pyrE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.067e-20
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = 1
Query:   82 AVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEM 558
            A+KFG+F L SG  S  YID++   + P +L +I   I   + S      + G+   ++PI   VS+    P ++ RK+   +GT K   G+    E   II+D+ T+G S+++ A  +R  G +V  A+ ++DRE+G  E LKEN IEL+++IK SE+
Sbjct:   11 AIKFGDFVLTSGKRSGYYIDIKSAYTDPKILDEIGLEISGMVKSGK----IAGMELGSVPILVSVSIKTKRPFVIIRKDDLKHGTRKRYIGSINLNEEIDIIDDVATTGGSIMKAAEIIRNNGGIVKRAICVVDREEGAAEMLKENNIELYSIIKASEL 165          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_COXBU (Orotate phosphoribosyltransferase OS=Coxiella burnetii GN=pyrE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.067e-20
Identity = 54/186 (29.03%), Postives = 97/186 (52.15%), Query Frame = 1
Query:   43 SMESLILQLHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPST-TKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDRE-QGGRENLKENGIELHAMIKLSEMVRVLREKGKLDE 594
            +++++ L LHE        ++  SGI SP+Y D RLI+SYP   + I +  +  +      +D+V G     +P A  ++   D+PM+  R + K +G    IEG  +K +  LI+EDL+++G S L   + LR  G+ VTD + +   +    ++N  +  I  HA+     ++ +  ++G +DE
Sbjct:   13 NIKAVTLNLHE-------PYRYTSGILSPIYCDNRLIISYPEKRKMIIEAFLQLIEKNHLSFDIVAGTATAGIPHAAWIADRLDLPMIYVRAKAKTHGKQNQIEGRIRKGQRALIVEDLISTGKSALAAGLALREKGVTVTDCIAIFSYQLPQAQQNFSDANINCHALSHFDTLIEMAVDEGYIDE 191          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_SULSO (Orotate phosphoribosyltransferase OS=Sulfolobus solfataricus GN=pyrE PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20
Identity = 53/186 (28.49%), Postives = 109/186 (58.60%), Query Frame = 1
Query:   67 LHEISAVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLDEETERVVMKFL 624
            L E   +  G+F L SG  SP Y+DLR + +YP     +++ I  +      +D++ G+    +P++  ++ +   PM   R E K +GT + +E + K + + L+++D+ T+G S+ +  + +   G  V+DA+V+IDR++G  + L++ G++LH++ K+SE++  L +  KL +  ++ ++ +L
Sbjct:    7 LLERKLLLIGSFVLTSGKVSPYYLDLRPLPNYPEFYDIVNQAIKKA--KDIPHDIIVGIATGGVPLSAFIACNLKEPMGYIRIEKKGHGTNRTLELDVKGKRV-LLVDDVATTGVSIEKATLEILNGGGKVSDALVIIDRQEGASQRLEKLGVKLHSLFKISEILDELLKSDKLKDNEKKSILDYL 189          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_RHISN (Orotate phosphoribosyltransferase OS=Rhizobium sp. (strain NGR234) GN=pyrE PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20
Identity = 67/200 (33.50%), Postives = 101/200 (50.50%), Query Frame = 1
Query:   49 ESLILQLHEISAVKFGN---FKLKSGISSPVYIDLRLIVSYP---SLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLI--DREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLDEETERVVMKFL 624
            E +   L EI AV F     +KL SG++SPVYID R ++SYP   S +   +   I       ++D+V G     +P A  ++    +PM+  RK  K +G    IEG+  +    L+IEDL T+G S+ +    +RAAG +V   + L   D     R N+K  G++LH +     ++ V RE+   DE+T   V  FL
Sbjct:   14 ELVAKMLWEIKAVHFRADEPYKLSSGMASPVYIDCRKLISYPRIRSAVMDFAAATILRDAGFEQFDVVAGGETAGIPFAAMLAERLGLPMIYVRKAPKGHGRNAQIEGHMPEGARVLVIEDLTTAGGSMFKFIDAIRAAGGIVEHGIALFYYDIFPEARGNMKSKGVDLHYIATWRNVLAVAREQALFDEKTLNEVEAFL 213          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_RHIME (Orotate phosphoribosyltransferase OS=Rhizobium meliloti GN=pyrE PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20
Identity = 73/215 (33.95%), Postives = 105/215 (48.84%), Query Frame = 1
Query:   49 ESLILQLHEISAVKFGN---FKLKSGISSPVYIDLRLIVSYP---SLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLI--DREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLDEETERVVMKFLEEXKKVAGSNLSGVR 669
            E +   L EI AV F     ++L SG++SPVYID R +VSYP   S +   +   I       ++D+V G     +P A  ++    +PM+  RK  K +G    IEG   +    L+IEDL T+G S+ +    +RAAG VV   + L   D     R N+K  G++LH +     ++ V RE    DE+T   V  FL      +G N  GVR
Sbjct:   14 ELVAKMLWEIKAVHFRADEPYRLASGMASPVYIDCRKLVSYPRIRSAVMDFAAATILREAGFEQFDVVAGGETAGIPFAAMLAERLGLPMIYVRKAPKGHGRNAQIEGYMPEGARVLVIEDLTTAGGSMFKFIDAIRAAGGVVEHGIALFYYDIFPEARGNMKSKGVDLHYIATWRNVLAVARELALFDEKTLNEVEAFLNAPLDWSGRN-GGVR 227          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_ANASP (Orotate phosphoribosyltransferase OS=Anabaena sp. (strain PCC 7120) GN=pyrE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.926e-19
Identity = 62/173 (35.84%), Postives = 97/173 (56.07%), Query Frame = 1
Query:   82 AVKFGNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSV-----SNDVPMLMRRKEIKDYGTAKAIEG-NFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVRVLREKG 582
            A K G+F L SG  S  YI+ + +  +P     I + ++S LPS T+   V G+   A PI T VSV     +  +P L+ RKE K +GT   IEG N  +    +++ED+VT+G S ++    LRAAG VV + + L+DR+QGG E  +  G++  A+  + ++ +  +E G
Sbjct:   35 AYKEGDFVLSSGQPSSYYINGKQVTLHPQGALAIGRILLSLLPSDTQ--AVAGLTLGADPIVTAVSVVSAYENRPIPALIIRKEAKGHGTKAYIEGPNLPEGAKVVVLEDVVTTGQSAMKAVDRLRAAGYVVDEVISLVDRQQGGAEFYQSVGLKFEAVFTIMDLQQRYQELG 205          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_SINMW (Orotate phosphoribosyltransferase OS=Sinorhizobium medicae (strain WSM419) GN=pyrE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.515e-19
Identity = 66/201 (32.84%), Postives = 101/201 (50.25%), Query Frame = 1
Query:   49 ESLILQLHEISAVKFGN---FKLKSGISSPVYIDLRLIVSYP---SLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLI--DREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLDEETERVVMKFLE 627
            E +   L EI AV F     +KL SG++SPVYID R ++SYP   S +   +   I       ++D+V G     +P A  ++    +PM+  RK  K +G    IEGN  +    L+IEDL T+G S+ +    +RAAG +V   + L   D     R ++K  G++LH +     ++ V RE    D++T   V  FL+
Sbjct:   14 ELVAKMLWEIKAVHFRADEPYKLSSGMASPVYIDCRKLISYPRIRSAVMDFAAATILREAGFEQFDVVAGGETAGIPFAAMLAERLGLPMIYVRKAPKGHGRNAQIEGNMPEGARVLVIEDLTTAGGSMFKFIDAIRAAGGMVEHGIALFYYDIFPEARGDMKSKGVDLHFIATWRNVLSVARELALFDDKTLNEVEAFLD 214          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_RHIL3 (Orotate phosphoribosyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=pyrE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.515e-19
Identity = 64/208 (30.77%), Postives = 102/208 (49.04%), Query Frame = 1
Query:   49 ESLILQLHEISAVKFGN---FKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSL---PSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLDEETERVVMKFLEEXKKVAGSN 654
            E L   L EI AV F     +KL SG++SPVYID R ++S+P +   +     S+L       ++D + G     +P A  ++    +PM+  RK+ K +G    IEGN  +    L+IEDL T+G S+ +    +RAAG +V   + L      G E   +  + LH +     ++ V +E+   D++T   V  FL+     +G N
Sbjct:   14 ELLAKMLWEIKAVHFNAAQPYKLSSGMASPVYIDCRKLLSFPRIRSTVMDFAASTLLRDAGFEQFDCIAGGETAGIPFAALLADRLSLPMIYVRKQPKGHGRNAQIEGNMPEGSRVLVIEDLTTAGGSMFKFIDAIRAAGGIVDHGIALFFYGIFGEERFADGKVRLHHIATWRNVLAVAKEQKLFDDKTLSEVEAFLDAPLAWSGRN 221          
BLAST of EY728468 vs. ExPASy Swiss-Prot
Match: PYRE_SULAC (Orotate phosphoribosyltransferase OS=Sulfolobus acidocaldarius GN=pyrE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.290e-19
Identity = 51/177 (28.81%), Postives = 102/177 (57.63%), Query Frame = 1
Query:   94 GNFKLKSGISSPVYIDLRLIVSYPSLLRQISKTIISSLPSTTKYDLVCGVPYTALPIATCVSVSNDVPMLMRRKEIKDYGTAKAIEGNFKKEEICLIIEDLVTSGASVLETAVPLRAAGLVVTDAVVLIDREQGGRENLKENGIELHAMIKLSEMVRVLREKGKLDEETERVVMKFL 624
            GNF L SG  SP Y+DLR + ++P +   +  + +  +     +D++ GV    +P A+ ++   + PM   R E K +GT + +E +   +++ ++++D+ T+G S+L+    +R AG  V  A+V++DRE+G  E L+  GI L ++ K+SE++  L +   + E  ++++  ++
Sbjct:   16 GNFMLTSGKVSPYYLDLRKLPNHPDIFSFVVSSAVDIVKGIN-FDMILGVVTGGVPFASFIACKLNKPMGYIRAEKKGHGTERLLEADVDGKKV-IVVDDVATTGGSILKAVEEVRKAGGKVEHALVIVDREEGAFEKLESVGIRLLSVYKVSEILNSLIKSNLVAENEKKLISDYM 190          
The following BLAST results are available for this feature:
BLAST of EY728468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
PYRE_ARCFU1.334e-2031.58Orotate phosphoribosyltransferase OS=Archaeoglobus... [more]
PYRE_PICTO5.067e-2035.85Orotate phosphoribosyltransferase OS=Picrophilus t... [more]
PYRE_COXBU5.067e-2029.03Orotate phosphoribosyltransferase OS=Coxiella burn... [more]
PYRE_SULSO6.618e-2028.49Orotate phosphoribosyltransferase OS=Sulfolobus so... [more]
PYRE_RHISN6.618e-2033.50Orotate phosphoribosyltransferase OS=Rhizobium sp.... [more]
PYRE_RHIME6.618e-2033.95Orotate phosphoribosyltransferase OS=Rhizobium mel... [more]
PYRE_ANASP1.926e-1935.84Orotate phosphoribosyltransferase OS=Anabaena sp. ... [more]
PYRE_SINMW2.515e-1932.84Orotate phosphoribosyltransferase OS=Sinorhizobium... [more]
PYRE_RHIL32.515e-1930.77Orotate phosphoribosyltransferase OS=Rhizobium leg... [more]
PYRE_SULAC4.290e-1928.81Orotate phosphoribosyltransferase OS=Sulfolobus ac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-B08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728468 ID=EY728468; Name=EY728468; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCCCAAAAGGCAGAAACGCAATGTCGTCGCATTCGATGGA
GTCATTGATTCTCCAACTCCACGAGATCTCGGCGGTTAAATTCGGAAACT
TTAAGCTAAAATCCGGCATATCGTCTCCCGTTTACATCGACCTCCGACTT
ATCGTTTCGTACCCTTCCCTCCTCCGCCAAATATCCAAAACCATCATCTC
CTCCCTCCCCTCCACAACCAAATACGACCTCGTGTGCGGCGTTCCGTACA
CCGCCCTCCCAATCGCCACCTGCGTCTCCGTCTCCAACGACGTCCCCATG
CTCATGCGGCGCAAGGAAATCAAAGACTACGGCACCGCCAAGGCCATCGA
AGGCAATTTCAAGAAGGAAGAAATCTGTCTGATCATCGAAGATTTAGTCA
CCAGCGGCGCGTCGGTCCTCGAAACGGCGGTGCCATTGAGAGCGGCGGGG
CTGGTGGTGACGGACGCCGTCGTATTGATCGACAGAGAGCAGGGAGGGAG
GGAGAATCTGAAGGAGAACGGAATTGAGTTGCATGCGATGATAAAGCTGA
GCGAAATGGTTAGGGTTTTGAGGGAGAAAGGGAAGCTTGATGAGGAAACG
GAGAGAGTGGTGATGAAGTTTTTGGAGGAAAANAAGAAAGTGGCGGGTTC
GAATTTAAGTGGGGTTAGGGTTAGGGTTTAGGGTTTGAAGTACGAAAAAA
GGGCGATTTGATGAAGAATGAGACTGGGAAAAAATGTTCAAGTGATGGTG
AAAAANGAAAATAATTGTGTTTGCTGGTGATGTTGCCCTGNTGCTGAGTT
GGTCAATTTGCGAGAAGGTGGGCCAAGATCTGGTGTGGAAACCAGGTGAT
ATTTTGCTGATTCCCCGCGAATTGGTGCAANTTGTGGC
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