EY728456

Overview
NameEY728456
Unique NameEY728456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_AERS4 (Glycogen synthase OS=Aeromonas salmonicida (strain A449) GN=glgA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.411e-17
Identity = 68/229 (29.69%), Postives = 109/229 (47.60%), Query Frame = 1
Query:  169 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE-LDNII--RKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRKVKYL 846
            Y DN  RF+    AAL A   L+          +  ++V   NDWHT L+P  LKT +     ++  + V  IHN A+QG F  E F  +   A ++    +  G+        +N +K G+L +D +  VSP+YA EL++    G   + NI   R   ++GI+NG D  +W+P    +      +     +   + +L  E GLPV  ++P+ G + RL  +K  +L
Sbjct:  111 YGDNGERFAFFSAAALHACEQLD----------FAPEIVH-CNDWHTGLLPLLLKTRHAHNPFFQHTRSVISIHNAAFQGVFGREQFWAMPEIADYEQRISYDYGH--------VNLLKCGVLYADKINAVSPNYASELLT--HLGAHGMANIFQQRAADLRGILNGCDYKDWDPAFDDFLPATYDVDNLAGKRVCKQTLQQEAGLPV-TDLPIYGMVCRLTEQKGVHL 317          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA1_METCA (Glycogen synthase 1 OS=Methylococcus capsulatus GN=glgA1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.411e-17
Identity = 73/227 (32.16%), Postives = 114/227 (50.22%), Query Frame = 1
Query:  160 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            G  + DN  RF+LL + A++      L  ++   G +  DVV   NDW T LIP  L    +P        VVF +HN+AYQG F +E F  L LP +     + ++ Y       +++++K G++ +D + TVSP YA+E+ + E  G  LD ++  RK+ + GI+NG+D   WNP    Y            +  +   L    GLP D  + V+G +GR+  +K
Sbjct:  101 GAPWPDNAERFALLARVAVD------LTQDRLGLG-WKPDVVH-CNDWQTGLIPPLLSD--EPN----RPAVVFTVHNLAYQGLFPYETFQRLALPPRL-WKMEALEFYG------QLSFIKGGLVFADRINTVSPSYAEEIQTPE-FGCGLDGLLRSRKSCLSGILNGIDDVAWNPATDPYLPAPYGPDTLERKKVNRTVLRQRYGLPDDPEVAVLGMVGRMVEQK 305          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_SHIF8 (Glycogen synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=glgA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.842e-17
Identity = 68/225 (30.22%), Postives = 105/225 (46.67%), Query Frame = 1
Query:  169 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            Y DN LRF+LL     E    L+         P+    V  A+DWH  L P YL    +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E+   +   G+E  L    R+  + G++NG+D   W+P   +             +A ++  L   +GL VD  +P+   + RL S+K
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKSQLQIAMGLKVDDKVPLFAVVSRLTSQK 305          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_ECOUT (Glycogen synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.842e-17
Identity = 68/225 (30.22%), Postives = 105/225 (46.67%), Query Frame = 1
Query:  169 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            Y DN LRF+LL     E    L+         P+    V  A+DWH  L P YL    +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E+   +   G+E  L    R+  + G++NG+D   W+P   +             +A ++  L   +GL VD  +P+   + RL S+K
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYAREITEPQFAYGIEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQK 305          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_ENT38 (Glycogen synthase OS=Enterobacter sp. (strain 638) GN=glgA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.406e-17
Identity = 66/226 (29.20%), Postives = 106/226 (46.90%), Query Frame = 1
Query:  169 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT----GIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            Y DN LRF+LL     E    L+         P+    +  A+DWH  L P YL     P      AK VF +HN+AYQG +       ++LP      + F + +     G +I+++KAG+  +D +  VSP YA+E+   E  G  ++ ++R+      + GI+NG+D   WNP   +             +A ++  L   +GL V+  +P+   + RL S+K
Sbjct:  103 YTDNVLRFALLGWVGAEMATGLD---------PFWRPDIVHAHDWHAGLAPAYLAARGHP------AKSVFTVHNLAYQGMYYAHHMNEIDLP------WSFYNMHGLEFNG-QISFLKAGLYYADHITAVSPTYAREITEPE-FGYGMEGLLRQRQREGRLTGILNGVDEKIWNPETDLLLASRFSRDSVEDKAENKRQLQVAMGLKVNDKVPLFAVVSRLTSQK 305          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_DESDG (Glycogen synthase OS=Desulfovibrio desulfuricans (strain G20) GN=glgA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.406e-17
Identity = 77/228 (33.77%), Postives = 108/228 (47.37%), Query Frame = 1
Query:  166 DYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFV-ANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT--GIKGIVNGMDVXEWNP*LTIY-RCQI*XLHCDGCEASSEGSLXAEVGLPVD-RNIPVIGFIGRLKSRK 834
            DY DN  RF   C+AA    R L            GE    V A+DW T+L+P  L    +    ++  + V  IHN+A+QGRF+   F    LP Q   S D ++ Y         N +K GI  +D V TVSP YA+E+ + E  G  L+ I+R+    + GI+NG D   W P    +  C        G +   + +L  E+GL       PV+GFIGRL+ +K
Sbjct:  107 DYFDNCERFVFFCRAAASMCRRL------------GEAPAVVHAHDWQTALLPALLYHWRRYDSFWEDTRTVMTIHNLAFQGRFSSRLFENCGLPPQ-AWSMDGVEFYG------DFNLLKGGIAYADKVTTVSPSYAREITTPE-FGCGLEGILRRRTHALHGILNGADYDIWKPEDDRFLPCTYSPDRLAG-KQRCKRALLDELGLDSSLMERPVLGFIGRLRDQK 313          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_ALKMQ (Glycogen synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glgA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.406e-17
Identity = 62/182 (34.07%), Postives = 92/182 (50.55%), Query Frame = 1
Query:  295 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            +DW T++I   LKT Y+  G YK+ K VF IHN+ YQG F  E  G L     F  S    +       G  +N+MK G+  SD + TVSP YAQE +     G  L+ ++  +K  ++G+ NG+D   +NP   I+  +         +  ++  L   + L VD  IP+IG + RL  +K
Sbjct:  132 HDWQTAMISYLLKTQYQHHGFYKNIKTVFTIHNLKYQGVFPQEVLGDL-----FNGSQQHFNEGGVEYHG-NVNYMKGGLNFSDYITTVSPTYAQE-IQDPFFGEGLEGVLSRKKKQLQGVTNGIDDSVYNPQTDIHLFKNFSSENLRNKKDNKLGLQERLNLAVDAKIPMIGMVTRLVEQK 306          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA2_BRAJA (Glycogen synthase 2 OS=Bradyrhizobium japonicum GN=glgA2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.406e-17
Identity = 83/270 (30.74%), Postives = 124/270 (45.93%), Query Frame = 1
Query:   73 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK----INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT--GIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK-VKYLAAAIP 861
            G+D   +D P   A+         Y    G D+ DN +RF+ L + A +    L           +  D+V  A+DW   L P YL    +P+        V  IHN+AYQG+FA E  G + LP    SSFD        V G +    I+++KAG+  +D + TVSP YA+E+ S E  G+ L  ++R     + GI+NG+D+  WNP    +             A+++  L  +  L      P++G I RL  +K +  L  AIP
Sbjct:   80 GLDLFVLDVPHLYAR-----PGNPYVTTEGVDWPDNGVRFAALSRVAADIGHGL--------VPAFVPDIVH-AHDWQAGLAPAYLHYDNRPR-----PGTVMTIHNMAYQGKFAPELIGAIGLP---WSSFD--------VNGLEYFGGISFLKAGLQFADRITTVSPTYAREIQSDEG-GMGLGGLLRARAGALSGILNGIDIAVWNPQTDSHIAYRFGAEDLTFRAANKAVLQQQFNLDSSDEAPLLGVISRLSWQKGLDLLLEAIP 318          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_YERPB (Glycogen synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=glgA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.143e-17
Identity = 77/267 (28.84%), Postives = 121/267 (45.32%), Query Frame = 1
Query:   43 KVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-GEDKGVE--LDNIIRKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            +V   + H RG+    +D P    +         Y   +   Y DN LRF+LL   A E    L+          Y    V  A+DWH  L   YL    +P      A+ VF +HN+AYQG F+ +    L+LPA+F   +  ++ Y       +I+++KAG+  +D V TVSP YA+E+       G+E  L  ++R+  + GI+NG+D   W+P                 +A ++  L   +GL +  N P+   + RL  +K
Sbjct:   66 RVALRYGHYRGIGIYLIDAPALYDRAGSP-----YHDASLYAYSDNYLRFALLGWMACELACGLD---------GYWRPEVVHAHDWHAGLTCAYLAARGRP------ARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYG------QISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALVRQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQK 305          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_SHISS (Glycogen synthase OS=Shigella sonnei (strain Ss046) GN=glgA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.143e-17
Identity = 68/225 (30.22%), Postives = 105/225 (46.67%), Query Frame = 1
Query:  169 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            Y DN LRF+LL     E    L+         P+    V  A+DWH  L P YL    +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E+   +   G+E  L    R+  + G++NG+D   W+P   +             +A ++  L   +GL VD  +P+   + RL S+K
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQK 305          
The following BLAST results are available for this feature:
BLAST of EY728456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 299
Match NameE-valueIdentityDescription
GLGA_AERS41.411e-1729.69Glycogen synthase OS=Aeromonas salmonicida (strain... [more]
GLGA1_METCA1.411e-1732.16Glycogen synthase 1 OS=Methylococcus capsulatus GN... [more]
GLGA_SHIF81.842e-1730.22Glycogen synthase OS=Shigella flexneri serotype 5b... [more]
GLGA_ECOUT1.842e-1730.22Glycogen synthase OS=Escherichia coli (strain UTI8... [more]
GLGA_ENT382.406e-1729.20Glycogen synthase OS=Enterobacter sp. (strain 638)... [more]
GLGA_DESDG2.406e-1733.77Glycogen synthase OS=Desulfovibrio desulfuricans (... [more]
GLGA_ALKMQ2.406e-1734.07Glycogen synthase OS=Alkaliphilus metalliredigens ... [more]
GLGA2_BRAJA2.406e-1730.74Glycogen synthase 2 OS=Bradyrhizobium japonicum GN... [more]
GLGA_YERPB3.143e-1728.84Glycogen synthase OS=Yersinia pseudotuberculosis s... [more]
GLGA_SHISS3.143e-1730.22Glycogen synthase OS=Shigella sonnei (strain Ss046... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-H12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728456 ID=EY728456; Name=EY728456; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGAATTGAGCTGAAAGTTGGAGACAAAATTGAAAAAGTTCG
CTTCTTTCATTGCCACAAGAGAGGAGTTGATCGGGTGTTTGTGGATCATC
CTTGGTTTCTTGCGAAGGTGTGGGGTAAAACCCAATCCAAAATCTATGGG
CCTAGGACTGGAGAGGACTACCAGGACAACCAACTTCGCTTCAGCTTGTT
GTGCCAGGCAGCTCTTGAAGCACCGAGAATTCTGAATCTTAACAGCAACA
AATATTTCTCTGGACCATATGGTGAAGATGTCGTTTTTGTTGCTAATGAC
TGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGCCCAA
AGGGATGTACAAAAGTGCCAAAGTTGTTTTTTGTATCCACAATATTGCTT
ACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTCCAGCT
CAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCTGTGAG
AGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGACATGG
TCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTGAAGAC
AAAGGAGTAGAATTGGATAATATCATCCGTAAAACTGGCATTAAGGGAAT
TGTGAACGGGATGGATGTCCANGAGTGGAACCCTTGACTGACAATATATA
GGTGTCAAATATGATNGCTTCACTGTGATGGATGCGAAGCCTCTTCTGAA
GGAAGCCTCCNAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCTGT
CATAGGCTTCATTGGTAGACTGAAGAGCAGAAAGGTCAAATATCTTGCAG
CTGCCATCCCCATTCATCAAGAGAATGTCAGATATTATCTTGGTCATGGC
A
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