EY728456

Overview
NameEY728456
Unique NameEY728456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_PSEA7 (Glycogen synthase OS=Pseudomonas aeruginosa (strain PA7) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.577e-11
Identity = 62/185 (33.51%), Postives = 90/185 (48.65%), Query Frame = 1
Query:  160 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYG----EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKS--SFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVXEWNP 684
            G D+ DN LRF+ LC AA E             +G +G    +  +  ANDW ++L P Y+       G+   +  +F IHN+AYQG    +    L LP +  S  S +F         GR ++++KAGI  +  + TVS  YAQE+ + E  G  L  I++    K  + GIVNG+D   W P
Sbjct:  134 GNDWADNHLRFARLCLAAAE------------IAGGHGAQGWQPGLVHANDWPSALTPAYMAW----NGVRTPS--LFTIHNLAYQGLCDLQCSAELGLPDEALSPESMEF--------HGR-LSFLKAGIAHAHHITTVSETYAQEITTPE-YGCGLHGILKCKVEKRQLSGIVNGID-DSWQP 289          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_BACHD (Glycogen synthase OS=Bacillus halodurans GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.577e-11
Identity = 70/259 (27.03%), Postives = 116/259 (44.79%), Query Frame = 1
Query:   70 RGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS---GEDKGVELDNIIRKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            +GV   F+D+ ++  +       ++YG      Y D   RF+    A L +   L+ + +           +   +DW + LIP Y+KT      +      VF IHN+ YQG F  + F  LL+   +  +  + +DG         IN++K  ++ SD V TVSP YAQE+ +   GE     L     KT  +GI+NG+D+ +++P  T         H    +  ++  +     LP  ++IP+I  + RL   K
Sbjct:   80 QGVTYYFIDNEYYFKR------ERLYG------YLDEAERFTFFNHAVLSSLPFLDESPD-----------LIHCHDWQSGLIPAYMKT----GSVENPVPTVFTIHNLRYQGAFPPDVFRELLHFAPEHFAGLE-MDG--------AINFLKGALVHSDRVTTVSPTYAQEIQTPAFGEGLHGLLHQERGKT--RGILNGIDLEDFDP-KTDPHVTYPYKHNQMEKRKNKQVIQRLFELPERKDIPLIAMVSRLVEEK 299          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_ACHLI (Glycogen synthase OS=Acholeplasma laidlawii (strain PG-8A) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.577e-11
Identity = 64/228 (28.07%), Postives = 107/228 (46.93%), Query Frame = 1
Query:  169 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGM-YKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGM-DVXEWNP*LTIYRCQI*XL--HCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            Y D+  RF+    A LE+  I+           +  D++ + NDW TS+IP  L   Y+ +   Y     +  IHN+ YQG F  +      +   F + FD+       +   ++N++KAGI  +  + TVSP Y++E+++ E  G  LD  +  R     GI+NG+ D   +NP    Y  +   +  H  G   + +  L    GL  + + P+I ++GRL  +K
Sbjct:  100 YHDDAERFAAFSYAILESLDIIE----------FYPDILHI-NDWQTSMIPYLLDKHYRHQSFNYFRIHTLLTIHNLQYQGDFDKD------VAKFFNTDFDYTY-----IHFDRVNYLKAGIERATKINTVSPTYSKEVMTRE-YGFSLDGSLQNRINDFSGILNGIDDQNTFNPKTDKYLIKTYSVSNHKSGKNLNKQ-FLLEHFGLDKNLDEPLIAYVGRLADQK 303          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_XANCP (Glycogen synthase OS=Xanthomonas campestris pv. campestris GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 55/194 (28.35%), Postives = 89/194 (45.88%), Query Frame = 1
Query:  145 YGPRTGEDYQDNQLRFSLLCQAALEA----------PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII----RKTGIKGIVNGMDVXEWNP 684
            Y   +G +++DN +RF+ L  AA +           PR+L+LN                  DW     PC L   Y  +    +   +  IHN+AYQG   +     L +PA+  S  +F           ++++++ GI+ +D V TVS  YAQ+ ++G  +G  LD ++     K  + GIVNG+D   W+P
Sbjct:   94 YVSTSGSEFEDNAIRFATLSHAAAQIAAGRAGLGWRPRLLHLN------------------DW-----PCALAAAYV-RWSGGTTPCLLTIHNLAYQGLVPYSMAAALGIPAERVSELEFYG---------QMSFLRGGIVHADHVNTVSVSYAQQ-ITGPAQGCGLDRLLAGRAAKGALSGIVNGIDA-SWDP 252          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_XANC8 (Glycogen synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 55/194 (28.35%), Postives = 89/194 (45.88%), Query Frame = 1
Query:  145 YGPRTGEDYQDNQLRFSLLCQAALEA----------PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII----RKTGIKGIVNGMDVXEWNP 684
            Y   +G +++DN +RF+ L  AA +           PR+L+LN                  DW     PC L   Y  +    +   +  IHN+AYQG   +     L +PA+  S  +F           ++++++ GI+ +D V TVS  YAQ+ ++G  +G  LD ++     K  + GIVNG+D   W+P
Sbjct:   94 YVSTSGSEFEDNAIRFATLSHAAAQIAAGRAGLGWRPRLLHLN------------------DW-----PCALAAAYV-RWSGGTTPCLLTIHNLAYQGLVPYSMAAALGIPAERVSELEFYG---------QMSFLRGGIVHADHVNTVSVSYAQQ-ITGPAQGCGLDRLLAGRAAKGALSGIVNGIDA-SWDP 252          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPH (Glycogen synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 54/206 (26.21%), Postives = 97/206 (47.09%), Query Frame = 1
Query:   73 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVXEWNP 684
            G+   F+D+ ++ A       +K YG      Y+D + +F+ L +A L    +L+   +           +   +DW T L+P +L   ++    Y   K +  IHN+ +QG +  +    +   +++  S D ++ Y         N++K GI+ SD + TVS  YA + ++    G  LD ++R     + GIVNG+D  E+NP
Sbjct:   82 GIWYYFIDNEFYFAG------NKPYG----NIYEDIE-KFAFLSKAVLTCLPVLDFRPD-----------IIHCHDWQTGLVPVFLHDSFQKNEFYHGIKTIMTIHNLKFQGVWDKKTVQDITALSEYYFSPDKLETYG------DANYLKGGIVFSDYITTVSDTYAHD-ITMPFYGEGLDGLMRARSDCLCGIVNGIDYEEYNP 258          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_HELMI (Glycogen synthase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 54/184 (29.35%), Postives = 88/184 (47.83%), Query Frame = 1
Query:  295 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNI--IRKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEAS--SEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            NDW        LK  Y+    Y+    V  +HN+ YQG F  +    + L        D ++ Y +      +N+MKAG++ +D++ TVS  YA+E+ + E  G  LD +  +R + + GIVNG+DV  ++P    +         D  E    ++  L  + GLPV    P++G + RL  +K
Sbjct:  138 NDWQCGPAIALLKEEYRHHPAYRRIASVLTVHNLEYQGHFGRDILQFIGLRQDLFRP-DALEFYGQ------VNFMKAGLVFADLINTVSRTYAEEIQTSE-YGWGLDGLLRLRHSDLFGIVNGIDVEVYDPATDPHIPH--HYSADNIEGKKRNKAELQRQFGLPVS-EAPLLGLVHRLVDQK 310          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_PSEAE (Glycogen synthase OS=Pseudomonas aeruginosa GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 63/182 (34.62%), Postives = 87/182 (47.80%), Query Frame = 1
Query:  160 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFV-ANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKS--SFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVXEWNP 684
            G D+ DN LRF+ LC AA E              G  G     V ANDW ++L P Y+       G+   +  +F IHN+AYQG    +    L LP +  S  S +F         GR ++++KAGI  +  + TVS  YAQE+ + E  G  L  I++    K  + GIVNG+D   W P
Sbjct:  134 GNDWPDNHLRFARLCLAAAEIAG---------GRGAQGWQPGLVHANDWPSALTPAYMAW----NGVRTPS--LFTIHNLAYQGLCDLQCSAELGLPDEALSHESMEF--------HGR-LSFLKAGIAHAHHITTVSETYAQEITTPE-YGCGLHGILKYKVEKRQLSGIVNGID-DSWQP 289          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA2_ANASP (Probable glycogen synthase 2 OS=Anabaena sp. (strain PCC 7120) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 57/174 (32.76%), Postives = 83/174 (47.70%), Query Frame = 1
Query:  175 DNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGL--LNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDN--IIRKTGIKGIVNGMDVXEWNP 684
            D+ +RF+   +AALE        SNK        D++   +DW T LIP  L  +YK  GM  + +V + IHN  +QG    +      LN  A +       D +N       +N+MK GI+ S+ V TVSP++A E     D G  L +   + K    G++NG+D   WNP
Sbjct:  107 DDDMRFAFFSKAALEFLH----QSNKR------PDIIH-CHDWQTGLIPVMLYEIYKYHGM-DTQRVCYTIHNFKHQGIGGVKTLWATGLNREAYYFQDDKLRDDHNPFA----LNYMKGGIVYSNAVTTVSPNHALE-AQYTDVGCGLGHTLYLHKEKFSGVLNGIDYDFWNP 263          
The following BLAST results are available for this feature:
BLAST of EY728456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 299
Match NameE-valueIdentityDescription
GLGA_PSEA72.577e-1133.51Glycogen synthase OS=Pseudomonas aeruginosa (strai... [more]
GLGA_BACHD2.577e-1127.03Glycogen synthase OS=Bacillus halodurans GN=glgA P... [more]
GLGA_ACHLI2.577e-1128.07Glycogen synthase OS=Acholeplasma laidlawii (strai... [more]
GLGA_XANCP4.395e-1128.35Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_XANC84.395e-1128.35Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_CLOPH4.395e-1126.21Glycogen synthase OS=Clostridium phytofermentans (... [more]
GLGA_HELMI5.741e-1129.35Glycogen synthase OS=Heliobacterium modesticaldum ... [more]
GLGA_PSEAE7.497e-1134.62Glycogen synthase OS=Pseudomonas aeruginosa GN=glg... [more]
GLGA2_ANASP7.497e-1132.76Probable glycogen synthase 2 OS=Anabaena sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-H12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728456 ID=EY728456; Name=EY728456; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGAATTGAGCTGAAAGTTGGAGACAAAATTGAAAAAGTTCG
CTTCTTTCATTGCCACAAGAGAGGAGTTGATCGGGTGTTTGTGGATCATC
CTTGGTTTCTTGCGAAGGTGTGGGGTAAAACCCAATCCAAAATCTATGGG
CCTAGGACTGGAGAGGACTACCAGGACAACCAACTTCGCTTCAGCTTGTT
GTGCCAGGCAGCTCTTGAAGCACCGAGAATTCTGAATCTTAACAGCAACA
AATATTTCTCTGGACCATATGGTGAAGATGTCGTTTTTGTTGCTAATGAC
TGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGCCCAA
AGGGATGTACAAAAGTGCCAAAGTTGTTTTTTGTATCCACAATATTGCTT
ACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTCCAGCT
CAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCTGTGAG
AGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGACATGG
TCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTGAAGAC
AAAGGAGTAGAATTGGATAATATCATCCGTAAAACTGGCATTAAGGGAAT
TGTGAACGGGATGGATGTCCANGAGTGGAACCCTTGACTGACAATATATA
GGTGTCAAATATGATNGCTTCACTGTGATGGATGCGAAGCCTCTTCTGAA
GGAAGCCTCCNAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCTGT
CATAGGCTTCATTGGTAGACTGAAGAGCAGAAAGGTCAAATATCTTGCAG
CTGCCATCCCCATTCATCAAGAGAATGTCAGATATTATCTTGGTCATGGC
A
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