EY728456

Overview
NameEY728456
Unique NameEY728456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig219 contig Csv1_Contig219:712..1615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.534e-22
Identity = 79/237 (33.33%), Postives = 114/237 (48.10%), Query Frame = 1
Query:  160 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK-VKYLAAAIP 861
            G+D+ DN LRF+ L Q      + L          P+ +  V  A+DW T L+P YLK   +P       K VF IHN+A+QGRF +E  G L LP +     D I+ Y        I ++KAG+  +D + TVSP YA E + G + G+ LD ++R     + GI+NG+D   WNP           +      A ++  L A  GL  +    + G I RL  +K +  L  A+P
Sbjct:  104 GKDWPDNGLRFAALAQVGAALGQGLL---------PHYKPDVLHAHDWQTGLLPAYLKYSGRP-----GPKTVFTIHNLAFQGRFPYELLGRLGLPER-AFGLDGIEYYG------GIGYLKAGLQLADRITTVSPTYAAE-IQGSEAGMGLDGLLRLRADRLSGILNGIDTDVWNPASDALISATYDVESIAARARNKKVLQARFGLKPEPGALLYGVISRLSWQKGLDLLLEALP 318          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.534e-22
Identity = 83/243 (34.16%), Postives = 126/243 (51.85%), Query Frame = 1
Query:  142 IYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK-VKYLAAAIP 861
            +YG   G  + DN  RF+ L   AL+A + L           +  D++  ANDW T L+P  L+  ++  G    AK VF IHN+AYQG+F  +  G L LP    ++ D ++ ++       +N++KAG++ SD + TVSP YA+E+ + E +G  LD ++R     + GI+NG+D  EWNP    +      L     +A  +  L A  GL  D   PV GF+ RL  +K +  L  A+P
Sbjct:   99 LYGDAGGA-FADNHRRFAYLSVGALQAAQRLR----------FIPDIIH-ANDWQTGLVPVALRRGFQT-GPLAHAKSVFTIHNLAYQGQFPKDVMGDLALPWDLFTAHDGLEFHD------TVNFLKAGLVFSDALTTVSPTYAREIQTPE-QGYGLDGLLRHRAHRLHGILNGVDTHEWNPEDDAFLPARYGLKDLSGKAVCKRELLARFGLE-DGPAPVFGFVSRLAWQKGMDLLLEALP 320          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOMG (Glycogen synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.534e-22
Identity = 75/233 (32.19%), Postives = 115/233 (49.36%), Query Frame = 1
Query:  142 IYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNL-PAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-GEDKGVELDNIIRKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            +YGP  G DY DN LRF+  C++ L+  + ++   +           V   +DW ++LIP  LK        +    V+F IHN+AYQG F  +      L P+ F  S D I+ Y       +IN +K  IL +D + TVS  Y  E++S G+  G+E     R+  + GI+NG+D  EWNP L     +         + + +  L  E+GL    +IP+IG +GR+  +K
Sbjct:   98 LYGPPEG-DYPDNPLRFAFFCRSVLQFLKRMDFRPD-----------VIHCHDWQSALIPIILKYELGHDPFFNRTAVIFTIHNLAYQGVFPADALAQTGLDPSLF--SVDRIEFYG------RINLLKGAILAADAITTVSETYCHEILSPGQGCGLEGVLERRQADLAGILNGLDSEEWNPSLDRRIFRNYSSKSLAGKGADKRELQRELGLKAGASIPIIGMVGRIVEQK 310          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_STRA3 (Glycogen synthase OS=Streptococcus agalactiae serotype III GN=glgA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.228e-22
Identity = 96/291 (32.99%), Postives = 145/291 (49.83%), Query Frame = 1
Query:   13 IELKVGDKIEKVRFFHC-----HKR-GVDRVFVDHP--WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEG------SLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            ++ K GD+IE + +F+      H+  GV R+  D+   +F+   +   +  +YG     D+ D + RF+    AALE    +N          +  DV+ V +D+HT++IP  LK  Y     Y + + VF IHNI +QG+F  E  G L  + A+      + DG  +      +NWMKA IL SD V TVSP YA E+ + E  G  LD I+R     + GIVNG+D    NP    +      L     +++ EG      +L   +GLP D+N+P+IG + RL  +K
Sbjct:   47 VDQKFGDQIENLMYFYTDVGWRHQYVGVKRLSQDNVTFYFIDNQYYFYRGHVYG-----DWDDGE-RFAYFQLAALELMEKIN----------FIPDVLHV-HDYHTAMIPFLLKEKYHWIQAYNNIRTVFTIHNIEFQGQFGPEMLGDLFGVGAE-----RYEDGTLR--WNNCLNWMKAAILYSDRVTTVSPSYANEIKTPE-FGKGLDQIMRMEAGKLSGIVNGIDSDLLNPETDAF------LPYHFSKSNLEGKIKNKLALQENLGLPQDKNVPLIGIVSRLTDQK 306          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_OPITP (Glycogen synthase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.228e-22
Identity = 65/175 (37.14%), Postives = 99/175 (56.57%), Query Frame = 1
Query:  166 DYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVXEWNP 684
            DY+DN  RF   C+  +E  R+ ++ +          DVV  A+DW  +L+P  L+   + +G   + K +F IHNIA+QG F    F   NLP +  +S D ++ Y       +IN+MKAGIL +D V TVSP YA+E+ + E  G  LD ++  R++ + G++NG+D   WNP
Sbjct:  107 DYEDNSDRFIFFCKGVVETLRLADMQA----------DVVH-AHDWQAALLPLLLREAERRQGGMLAMKTIFTIHNIAFQGIFPRAVFARTNLPDEL-NSVDGLEYY------EQINFMKAGILFADRVTTVSPRYAEEIQTPE-FGCGLDGVVQTRESDLVGLLNGVDTKVWNP 262          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_LEPCP (Glycogen synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glgA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.440e-22
Identity = 78/242 (32.23%), Postives = 120/242 (49.59%), Query Frame = 1
Query:  145 YGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVXEWNP------*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRKVKYL 846
            Y       Y DN LRF LL   A +    L+         PY    V  A+DWH +L P YL+ +   +G  + A  V+ +HN+AYQG F    FG L LPA + +    ++ Y       +I++MK G+  +D + TVSP YA+E + G ++G  LD ++  R   + GI+NG+D   WNP        T  R ++        +A  + +L AE+GL  D  +P++  + RL  +K  +L
Sbjct:  102 YNDARQHPYDDNHLRFGLLGWVAAKLADGLD---------PYWAPRVVHAHDWHAALAPAYLRALEWARGR-RLAGSVYTVHNLAYQGFFPAHHFGDLGLPAAY-NQVHGLEFYG------QISFMKGGLYFADRITTVSPTYARE-IQGAEQGCGLDGLLRDRDADLSGILNGVDDAVWNPAGDALIPATYTRRKL------TGKAQCKATLQAELGLAEDPAVPLLCVVSRLTEQKGLHL 319          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_AQUAE (Glycogen synthase OS=Aquifex aeolicus GN=glgA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.233e-21
Identity = 77/233 (33.05%), Postives = 119/233 (51.07%), Query Frame = 1
Query:  142 IYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            IYGP  G  Y+DN +RF    +A  E             +G    DVV  ANDW T+LIP +LK ++K        K VF IHN+AYQG F  E    + +P  +    + ++ +        +N+MK GI+ SD++ TVSP YA+E +  ++ G  L+ +++K    ++GI+NG+D   WNP    Y  Q   L     +  ++  L  E+G+  ++  P+I FI R   +K
Sbjct:   92 IYGP-PGWGYEDNDIRFGGFSRAVSEL----------ISTGQLEADVVH-ANDWQTALIPLFLKEVFKTP-----VKTVFTIHNLAYQGLFPKETVERVGIPP-YLFHMEAVEFWGL------VNFMKGGIVFSDLITTVSPTYAKE-IQTQEYGYGLEGVLKKYSYKLRGILNGIDYEVWNPEKDKYIYQNYSLRNYSKKFKNKEFLSKELGIEAEK--PLISFINRFTHQK 297          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_MOOTA (Glycogen synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.610e-21
Identity = 80/247 (32.39%), Postives = 126/247 (51.01%), Query Frame = 1
Query:  169 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSE--GSLXAEVGLPVDRNIPVIGFIGRLKSRKVKYLAAAI--PIHQENVRYYL 891
            Y D+  RF+  C+A L     L    +           +   NDW T  IP +LK  ++    Y+    ++ IHN+ YQG F       + L  +F    + ++ Y       ++++MKAGIL +D+V TVS  YA E+ + E  G  LD ++RK    ++GI+NG+D  E++P  T  R  +     D  E   E   +L  E+ LPV R++PV+G I RL S+K   L AAI  P+ Q+++++ L
Sbjct:  103 YGDDAARFNFFCKAVLSMLPWLEFQPD-----------IIHCNDWQTGPIPLFLKVKHEDNPFYRETATIYTIHNLQYQGTFPRNILKTMALSEEFFVP-ERLEFYG------QVSYMKAGILYADLVNTVSKKYALEIQTPE-YGERLDGLLRKRAADLRGILNGIDYEEFDP-ATDRRLAV-NYDADHLEKKGENKAALQREMELPV-RDVPVLGLISRLVSQKGLDLLAAILDPLMQQDLQFVL 327          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_FERNB (Glycogen synthase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.103e-21
Identity = 79/229 (34.50%), Postives = 121/229 (52.84%), Query Frame = 1
Query:  160 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGS--LXAEVGLPVDRNIPVIGFIGRLKSRK 834
            G D  +  + FS    + +EA R LN          +  D+V V NDW T+LIP YLKT+++   +      V  IHN+ YQG F  E      LP  +  + D I+ Y       KIN++K GI+ SD++ TVSP YA+E +  ++ G +L+ ++  R + + GI+NG+D  E+NP LT  +  +     +  E   E    L  E+GLP +R++P+ G I RL  +K
Sbjct:  108 GPDLAEQAIFFSY---SVIEAIRKLN----------FEYDIVHV-NDWQTALIPVYLKTVFRDDPLLSKIATVLTIHNLGYQGIFEPEYLRFAGLP-DYLYNIDGIEFYG------KINFLKGGIIFSDIINTVSPTYAKE-IQQKEYGEKLEGVLRARSSDLYGILNGIDYEEFNP-LTDNKIYV-NYDLNTIEKKKENKKLLQKELGLP-ERDVPMFGMINRLVDQK 311          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_STRMU (Glycogen synthase OS=Streptococcus mutans GN=glgA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.747e-21
Identity = 87/293 (29.69%), Postives = 138/293 (47.10%), Query Frame = 1
Query:   13 IELKVGDKIEKVRFF--------------HCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR---KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            ++ K GD+IE + +F              H  + GVD  F+D+  +  +       +IYG     ++ D + RF+    AALEA   +           +  D++ V +D+HT++IP  LK  Y     Y   K VF IHNI +QG+F          P+     F   D   +    R    +NWMKA +L +D V TVSP YA+E+++ E  G  LD I+R     + G+VNG+D   ++P    +            +A ++ +L   VGLPV  ++P++G + RL  +K
Sbjct:   47 VDAKFGDQIEDLFYFFTNVGWRREYVGIKHIFRDGVDFYFIDNKHYFYR------GQIYG-----EFDDGE-RFAYFQLAALEAMEKIQ----------FIPDILHV-HDYHTAMIPYLLKEKYHWINAYHGIKTVFTIHNIEFQGQFN---------PSMLGELFGVGDERYRDGTLRWNDCLNWMKAAVLYADRVTTVSPSYAKEIMTPE-FGKGLDQIMRMESGKLSGVVNGIDTDLFDPETDPHLAVHFSKDDLSGKAKNKAALQERVGLPVREDVPLVGIVSRLTDQK 306          
The following BLAST results are available for this feature:
BLAST of EY728456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 299
Match NameE-valueIdentityDescription
GLGA_RHOPA5.534e-2233.33Glycogen synthase OS=Rhodopseudomonas palustris GN... [more]
GLGA_MYXXD5.534e-2234.16Glycogen synthase OS=Myxococcus xanthus (strain DK... [more]
GLGA2_GEOMG5.534e-2232.19Glycogen synthase 2 OS=Geobacter metallireducens (... [more]
GLGA_STRA37.228e-2232.99Glycogen synthase OS=Streptococcus agalactiae sero... [more]
GLGA_OPITP7.228e-2237.14Glycogen synthase OS=Opitutus terrae (strain DSM 1... [more]
GLGA_LEPCP9.440e-2232.23Glycogen synthase OS=Leptothrix cholodnii (strain ... [more]
GLGA_AQUAE1.233e-2133.05Glycogen synthase OS=Aquifex aeolicus GN=glgA PE=3... [more]
GLGA_MOOTA1.610e-2132.39Glycogen synthase OS=Moorella thermoacetica (strai... [more]
GLGA_FERNB2.103e-2134.50Glycogen synthase OS=Fervidobacterium nodosum (str... [more]
GLGA_STRMU2.747e-2129.69Glycogen synthase OS=Streptococcus mutans GN=glgA ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-H12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728456 ID=EY728456; Name=EY728456; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGAATTGAGCTGAAAGTTGGAGACAAAATTGAAAAAGTTCG
CTTCTTTCATTGCCACAAGAGAGGAGTTGATCGGGTGTTTGTGGATCATC
CTTGGTTTCTTGCGAAGGTGTGGGGTAAAACCCAATCCAAAATCTATGGG
CCTAGGACTGGAGAGGACTACCAGGACAACCAACTTCGCTTCAGCTTGTT
GTGCCAGGCAGCTCTTGAAGCACCGAGAATTCTGAATCTTAACAGCAACA
AATATTTCTCTGGACCATATGGTGAAGATGTCGTTTTTGTTGCTAATGAC
TGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGCCCAA
AGGGATGTACAAAAGTGCCAAAGTTGTTTTTTGTATCCACAATATTGCTT
ACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTCCAGCT
CAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCTGTGAG
AGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGACATGG
TCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTGAAGAC
AAAGGAGTAGAATTGGATAATATCATCCGTAAAACTGGCATTAAGGGAAT
TGTGAACGGGATGGATGTCCANGAGTGGAACCCTTGACTGACAATATATA
GGTGTCAAATATGATNGCTTCACTGTGATGGATGCGAAGCCTCTTCTGAA
GGAAGCCTCCNAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCTGT
CATAGGCTTCATTGGTAGACTGAAGAGCAGAAAGGTCAAATATCTTGCAG
CTGCCATCCCCATTCATCAAGAGAATGTCAGATATTATCTTGGTCATGGC
A
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