EY728456

Overview
NameEY728456
Unique NameEY728456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_STRA5 (Glycogen synthase OS=Streptococcus agalactiae serotype V GN=glgA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.747e-21
Identity = 95/291 (32.65%), Postives = 145/291 (49.83%), Query Frame = 1
Query:   13 IELKVGDKIEKVRFFHC-----HKR-GVDRVFVDHP--WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEG------SLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            ++ K GD+IE + +F+      H+  GV R+  D+   +F+   +   +  +YG     D+ D + RF+    AALE    ++          +  DV+ V +D+HT++IP  LK  Y     Y + + VF IHNI +QG+F  E  G L  + A+      + DG  +      +NWMKA IL SD V TVSP YA E+ + E  G  LD I+R     + GIVNG+D    NP    +      L     +++ EG      +L   +GLP D+N+P+IG + RL  +K
Sbjct:   47 VDQKFGDQIENLMYFYTDVGWRHQYVGVKRLSQDNVTFYFIDNQYYFYRGHVYG-----DWDDGE-RFAYFQLAALELMEKID----------FIPDVLHV-HDYHTAMIPFLLKEKYHWIQAYNNIRAVFTIHNIEFQGQFGPEMLGDLFGVGAE-----RYEDGTLR--WNNCLNWMKAAILYSDRVTTVSPSYANEIKTPE-FGKGLDQIMRMEAGKLSGIVNGIDSDLLNPETDAF------LPYHFSKSNLEGKIKNKLALQENLGLPQDKNVPLIGIVSRLTDQK 306          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_STRA1 (Glycogen synthase OS=Streptococcus agalactiae serotype Ia GN=glgA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.747e-21
Identity = 95/291 (32.65%), Postives = 145/291 (49.83%), Query Frame = 1
Query:   13 IELKVGDKIEKVRFFHC-----HKR-GVDRVFVDHP--WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEG------SLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            ++ K GD+IE + +F+      H+  GV R+  D+   +F+   +   +  +YG     D+ D + RF+    AALE    ++          +  DV+ V +D+HT++IP  LK  Y     Y + + VF IHNI +QG+F  E  G L  + A+      + DG  +      +NWMKA IL SD V TVSP YA E+ + E  G  LD I+R     + GIVNG+D    NP    +      L     +++ EG      +L   +GLP D+N+P+IG + RL  +K
Sbjct:   47 VDQKFGDQIENLMYFYTDVGWRHQYVGVKRLSQDNVTFYFIDNQYYFYRGHVYG-----DWDDGE-RFAYFQLAALELMEKID----------FIPDVLHV-HDYHTAMIPFLLKEKYHWIQAYNNIRAVFTIHNIEFQGQFGPEMLGDLFGVGAE-----RYEDGTLR--WNNCLNWMKAAILYSDRVTTVSPSYANEIKTPE-FGKGLDQIMRMEAGKLSGIVNGIDSDLLNPETDAF------LPYHFSKSNLEGKIKNKLALQENLGLPQDKNVPLIGIVSRLTDQK 306          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_PETMO (Glycogen synthase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=glgA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.119e-21
Identity = 80/238 (33.61%), Postives = 120/238 (50.42%), Query Frame = 1
Query:  127 KTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNI--IRKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            KT S +Y  +   D ++  L+ S  C +AL+  +    ++N           V   NDWHTSLIP YLKT Y    + K    +  IHNI YQG F  E      LP  +  + + ++ Y       K+N +K GIL S+++ TVSP YA+E+ S E+ G  L+ I  +R   + GI+NG+D   ++P    +       + D  +  ++ SL   +GL  D NI +I FIGRL  +K
Sbjct:   92 KTDS-LYDSKNIYDEENIFLKTSYFCDSALKTIKECEPDTN-----------VININDWHTSLIPVYLKTHYLQDNILKKIATILTIHNIGYQGLFNPEVLNQAGLP-NYLFNMNALEYYG------KVNVLKGGILFSNIINTVSPTYAKEIQS-EEYGYGLEGILKVRSEDLFGILNGIDYSIYDPLKDPHIFHPIESYED--KLKNKTSLQEYLGLTKDENITLISFIGRLFEQK 307          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_FRAP2 (Glycogen synthase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glgA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.992e-21
Identity = 79/256 (30.86%), Postives = 123/256 (48.05%), Query Frame = 1
Query:   76 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVXEWNP*L-TIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            +D   VD P   A+         Y   + + Y DN LRF+LL   A      L+          +  +VV  ++DWH  L+P Y+K      G  K+ K VF +HN+AYQG F    F  L+LP  F  S + ++ Y       ++++MKAG+  +D + TVSP YA+E+ S E +G  L+ ++  R   + G++NG+D   WNP   T+          +  +A  + +L A  GL    +  V G + RL  +K
Sbjct:   81 IDIYVVDAPSLFAR-----PGNPYADSSNQAYADNYLRFALLGWVAARISEGLDAK--------WKPEVVH-SHDWHAGLVPAYIKASELASGK-KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIF-LSMNGLEFYG------QVSFMKAGLYFADKITTVSPTYAKEIQSYE-QGCGLEGLLADRHNDLYGVLNGVDPQVWNPKKDTLIEANYSVTTANVGKAKCKTALQAMTGLAKKEDAVVFGIVTRLTEQK 313          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_THESQ (Glycogen synthase OS=Thermotoga sp. (strain RQ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.044e-20
Identity = 77/247 (31.17%), Postives = 124/247 (50.20%), Query Frame = 1
Query:  103 WFLAKVWGKTQSKIY-GPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            +F+A  +  +   +Y GP  GE       +    C A L+  + L+L            D+V V NDW T+LIP YLKT+Y+    +     V  IHN+ YQG F  +      LP  +  + D ++ Y      R++N++K GI+ SD++ TVSP YA+E +  E+ G +L+ ++  R   + GI+NG+D   +NP    Y      ++    +  ++  L  E+GLPV++   V G I RL  +K
Sbjct:   91 YFVANDYYFSAEDVYAGPDLGE-------QAIFFCAATLDLVKHLDLKP----------DIVHV-NDWQTALIPVYLKTVYRDDPYFSRTATVLTIHNLGYQGVFDPKYLSFAGLP-DYVFTIDGLEFY------RQLNFLKGGIVFSDVINTVSPTYAEE-IQTEEYGEKLEGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNRLELKWENKVKLQEELGLPVNKETAVAGLISRLVPQK 311          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_THEP1 (Glycogen synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.044e-20
Identity = 77/247 (31.17%), Postives = 124/247 (50.20%), Query Frame = 1
Query:  103 WFLAKVWGKTQSKIY-GPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            +F+A  +  +   +Y GP  GE       +    C A L+  + L+L            D+V V NDW T+LIP YLKT+Y+    +     V  IHN+ YQG F  +      LP  +  + D ++ Y      R++N++K GI+ SD++ TVSP YA+E +  E+ G +L+ ++  R   + GI+NG+D   +NP    Y      ++    +  ++  L  E+GLPV++   V G I RL  +K
Sbjct:   91 YFVANDYYFSAEDVYAGPDLGE-------QAIFFCAATLDLVKHLDLKP----------DIVHV-NDWQTALIPVYLKTVYRDDPYFSRTATVLTIHNLGYQGVFDPKYLSFAGLP-DYVFTIDGLEFY------RQLNFLKGGIVFSDVINTVSPTYAEE-IQTEEYGEKLEGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNRLELKWENKVKLQEELGLPVNKETAVAGLISRLVPQK 311          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_THEMA (Glycogen synthase OS=Thermotoga maritima GN=glgA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.363e-20
Identity = 77/247 (31.17%), Postives = 123/247 (49.80%), Query Frame = 1
Query:  103 WFLAKVWGKTQSKIY-GPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIPVIGFIGRLKSRK 834
            +F+A  +  +   +Y GP  GE       +    C A L+  + L+L            D+V V NDW T+LIP YLKT+Y+    +     V  IHN+ YQG F  +      LP  +  + D ++ Y       ++N++K GI+ SD++ TVSP YA+E +  E+ G +LD ++  R   + GI+NG+D   +NP    Y      ++    +  ++  L  E+GLPV++   V G I RL  +K
Sbjct:   91 YFVANDYYFSAEDVYAGPDLGE-------QAIFFCAATLDLVKHLDLKP----------DIVHV-NDWQTALIPVYLKTVYRDDPYFSRTATVLTIHNLGYQGVFDPKYLSFAGLP-DYVYTIDGLEFYG------QLNFLKGGIVFSDVINTVSPTYAEE-IQTEEYGEKLDGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNRLELKWENKVKLQEELGLPVNKETAVAGLISRLVPQK 311          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP2 (Glycogen synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=glgA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.363e-20
Identity = 77/230 (33.48%), Postives = 115/230 (50.00%), Query Frame = 1
Query:  160 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVXEWNP*LTIYRCQI*XLHCDGCEASSEGSLXAEVGLPVDRNIP---VIGFIGRLKSRK 834
            G+D+ DN LRF+ L QA     + L L         Y  D++  A+DW T L+P YL    +P     + K VF IHN+AYQG+F +E    + LP +   S D ++ Y        I ++KAG+  +D + TVSP YA E + G D G+ L+ ++R     + GI+NG+D   W+P           +   G  A ++ +L +  GL   RN P   + G I RL  +K
Sbjct:  104 GKDWPDNALRFAALAQAGAAIGQGLLLG--------YAPDILH-AHDWQTGLVPAYLAYSGRP-----APKCVFTIHNLAYQGQFPYELLTRIGLPER-AFSLDGVEYYG------GIGYLKAGLQLADRITTVSPTYALE-IQGPDAGMGLEGLLRLRADRLSGILNGIDTRVWDPTADELIPATYDIETIGARARNKQALQSRFGL---RNAPDALLYGVISRLSWQK 308          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_DESVH (Glycogen synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glgA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.363e-20
Identity = 80/227 (35.24%), Postives = 112/227 (49.34%), Query Frame = 1
Query:  166 DYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT--GIKGIVNGMDVXEWNP*LTIY-RCQI*XLHCDGCEASSEGSLXAEVGL-PVDRNIPVIGFIGRLKSRK 834
            DY DN  RF   C+A L   R L                V  A+DW T+L+P +L  + +    ++  + V  IHN+A+QGRFA   F    LP Q  S    +DG          N +KAGI  +D V TVSP YA+E++ G   G  LD I+RK    + GI+NG D   W+P    +  C+       G +A  + +L  E+GL P     P++GFIGRL+ +K
Sbjct:  107 DYFDNCERFVFFCRALLALMRRLGQ-----------PPAVLHAHDWQTALVPAFLYFLRQTDPFWQDTRSVLTIHNLAFQGRFASRLFETSGLPPQAWS----VDGAE---FWGDFNLLKAGIAYADKVTTVSPSYAREIL-GPAYGSGLDGILRKRAHALHGILNGADYDIWSPGNDRFLPCRYTPTDLAG-KAQCKRALIEELGLDPHLARRPILGFIGRLRGQK 313          
BLAST of EY728456 vs. ExPASy Swiss-Prot
Match: GLGA_DESVV (Glycogen synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glgA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.780e-20
Identity = 80/227 (35.24%), Postives = 112/227 (49.34%), Query Frame = 1
Query:  166 DYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT--GIKGIVNGMDVXEWNP*LTIY-RCQI*XLHCDGCEASSEGSLXAEVGL-PVDRNIPVIGFIGRLKSRK 834
            DY DN  RF   C+A L   R L                V  A+DW T+L+P +L  + +    ++  + V  IHN+A+QGRFA   F    LP Q  S    +DG          N +KAGI  +D V TVSP YA+E++ G   G  LD I+RK    + GI+NG D   W+P    +  C+       G +A  + +L  E+GL P     P++GFIGRL+ +K
Sbjct:  107 DYFDNCERFVFFCRALLALMRRLGQ-----------PPAVLHAHDWQTALVPAFLYFLRQGDPFWQDTRSVLTIHNLAFQGRFASRLFETSGLPPQAWS----VDGAE---FWGDFNLLKAGIAYADKVTTVSPSYAREIL-GPAYGSGLDGILRKRAHALHGILNGADYDIWSPGNDRFLPCRYTPTDLAG-KAQCKRALIEELGLDPHLARRPILGFIGRLRGQK 313          
The following BLAST results are available for this feature:
BLAST of EY728456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 299
Match NameE-valueIdentityDescription
GLGA_STRA52.747e-2132.65Glycogen synthase OS=Streptococcus agalactiae sero... [more]
GLGA_STRA12.747e-2132.65Glycogen synthase OS=Streptococcus agalactiae sero... [more]
GLGA_PETMO6.119e-2133.61Glycogen synthase OS=Petrotoga mobilis (strain DSM... [more]
GLGA_FRAP27.992e-2130.86Glycogen synthase OS=Francisella philomiragia subs... [more]
GLGA_THESQ1.044e-2031.17Glycogen synthase OS=Thermotoga sp. (strain RQ2) G... [more]
GLGA_THEP11.044e-2031.17Glycogen synthase OS=Thermotoga petrophila (strain... [more]
GLGA_THEMA1.363e-2031.17Glycogen synthase OS=Thermotoga maritima GN=glgA P... [more]
GLGA_RHOP21.363e-2033.48Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_DESVH1.363e-2035.24Glycogen synthase OS=Desulfovibrio vulgaris (strai... [more]
GLGA_DESVV1.780e-2035.24Glycogen synthase OS=Desulfovibrio vulgaris subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-H12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728456 ID=EY728456; Name=EY728456; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGAATTGAGCTGAAAGTTGGAGACAAAATTGAAAAAGTTCG
CTTCTTTCATTGCCACAAGAGAGGAGTTGATCGGGTGTTTGTGGATCATC
CTTGGTTTCTTGCGAAGGTGTGGGGTAAAACCCAATCCAAAATCTATGGG
CCTAGGACTGGAGAGGACTACCAGGACAACCAACTTCGCTTCAGCTTGTT
GTGCCAGGCAGCTCTTGAAGCACCGAGAATTCTGAATCTTAACAGCAACA
AATATTTCTCTGGACCATATGGTGAAGATGTCGTTTTTGTTGCTAATGAC
TGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGCCCAA
AGGGATGTACAAAAGTGCCAAAGTTGTTTTTTGTATCCACAATATTGCTT
ACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTCCAGCT
CAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCTGTGAG
AGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGACATGG
TCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTGAAGAC
AAAGGAGTAGAATTGGATAATATCATCCGTAAAACTGGCATTAAGGGAAT
TGTGAACGGGATGGATGTCCANGAGTGGAACCCTTGACTGACAATATATA
GGTGTCAAATATGATNGCTTCACTGTGATGGATGCGAAGCCTCTTCTGAA
GGAAGCCTCCNAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCTGT
CATAGGCTTCATTGGTAGACTGAAGAGCAGAAAGGTCAAATATCTTGCAG
CTGCCATCCCCATTCATCAAGAGAATGTCAGATATTATCTTGGTCATGGC
A
back to top