EY728455

Overview
NameEY728455
Unique NameEY728455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728455 vs. ExPASy Swiss-Prot
Match: TFDD2_RALEJ (Chloromuconate cycloisomerase OS=Ralstonia eutropha (strain JMP134) GN=tfdDII PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 70/187 (37.43%), Postives = 109/187 (58.29%), Query Frame = -3
Query:   61 SKSLGDRASVRVDVKQAGDEAVALRACKVLGDNGIDLIEQPISRNNRGGMARLNLSSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRAVLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHAFLTLNKLAWDTELFGPLLLTEDILAEPLVYRDFHLHVSTAPGLGLAIDEERLAFFRR 621
            +K L  +AS+RVD  +A DE   +RA   L   G+++IEQP++R N   MAR++  + + ++ DE ++ + DA  + +  AA + +LKI K GG R     A IA A G+ +Y GT LE  IGT A+     ++  L +  E+ GPLL+ ED+   P VY++  L +   PGLG+ +DE ++  F R
Sbjct:  175 AKELEGKASLRVDPNEAWDEPTTMRALAPLEAAGVEIIEQPVARWNLDAMARIHRQARSMLLIDEGVQSLHDASEVVKRAAAGLVSLKIMKTGGMRPARAMADIANAGGMHVYMGTFLETSIGTAANMQLAASIESLPYGGEVIGPLLIEEDLCEVPAVYKEHALWLPEGPGLGIRLDENQVRRFAR 361          
BLAST of EY728455 vs. ExPASy Swiss-Prot
Match: AEEP_BACSU (L-Ala-D/L-Glu epimerase OS=Bacillus subtilis GN=ykfB PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 51/176 (28.98%), Postives = 90/176 (51.14%), Query Frame = -3
Query:   97 KSLGDRASVRVDVKQAGDEAVALRACKVLGDNG--IDLIEQPISRNNRGGMARLNLSSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRAVLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHAFLTLNKLAWDTELFGPLLLTEDILAEPLVYRDFHLHVSTAPGLGL 618
            K +G    +R+D  Q      A+ A + + D G  I+L+EQP+ +++  G+ ++  ++  PIMADES+     AF + +  +A +  +K+ K GG     +  A+AEA G+    G+M+E  +G  A+AH F    +     +   PL+L  D+    + Y    + +   PGLG+
Sbjct:  180 KRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAH-FAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGI 354          
BLAST of EY728455 vs. ExPASy Swiss-Prot
Match: AEEP_CLOAB (L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum GN=CA_C0192 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.757e-16
Identity = 51/176 (28.98%), Postives = 89/176 (50.57%), Query Frame = -3
Query:   97 KSLGDRASVRVDVKQAGDEAVALRACKVLGDNG--IDLIEQPISRNNRGGMARLNLSSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRAVLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHAFLTLNKLAWDTELFGPLLLTEDILAEPLVYRDFHLHVSTAPGLGL 618
            K++G   ++R+D  Q      A+RA   + + G  I+L+EQP+   N  G+  +  +   P+MADES+   +DA  +    A  +  +K+ K GG    L+  A+AE  G+    G MLEG +   A+ H      ++    +L GP+L + D +    +Y + ++ +   PGLG+
Sbjct:  179 KAIGYEVNLRIDANQGWQPKEAIRALNEIENEGLKIELVEQPVKAWNLEGLKMVTDNVNIPVMADESVFSPKDAARVMEMRACDLINIKLMKTGGIHNALKICALAEVYGMECMLGCMLEGKVSVTAAVH-LAAAKRIITKIDLDGPVLCSRDDVVGGAMYDNSNIVLVDEPGLGI 353          
The following BLAST results are available for this feature:
BLAST of EY728455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TFDD2_RALEJ1.902e-3037.43Chloromuconate cycloisomerase OS=Ralstonia eutroph... [more]
AEEP_BACSU5.939e-1628.98L-Ala-D/L-Glu epimerase OS=Bacillus subtilis GN=yk... [more]
AEEP_CLOAB7.757e-1628.98L-Ala-D/L-Glu epimerase OS=Clostridium acetobutyli... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-H11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728455 ID=EY728455; Name=EY728455; organism=Citrus sinensis; type=EST; length=764bp
GGCAGGTTCACGGTCATTTTTACGTGGAACAACATCGCAGGTGTCCTCTT
GTTATTTATCGCGACGGAAGAACGCCAGGCGCTCTTCATCGATGGCCAGG
CCCAGGCCCGGAGCGGTGGAGACATGCAGGTGGAAATCGCGGTACACCAG
CGGCTCGGCGAGGATGTCTTCGGTGAGCAGCAGCGGGCCGAACAGCTCGG
TGTCCCACGCCAGTTTGTTCAAGGTGAGAAAGGCATGGGCCGAGGCCAGG
GTGCCGATACCGCCTTCGAGCATGGTGCCGCCGTACAGGCCGATGCCCGC
CGCTTCGGCAATCGCCGCGGTGCGCAATACCGCACGCGGGCCGCCGTTTT
TAGCGATCTTCAGCGCGAACACCGAGGCCGCGCCTTCGCGGGCCAGGTTG
AAGGCGTCTTCCACACATTCGATGGATTCGTCGGCCATGATCGGCGCCGG
GCTCGACAGGTTGAGCCGGGCCATGCCGCCACGGTTATTGCGCGAAATCG
GCTGTTCGATCAGGTCGATACCGTTGTCGCCCAACACCTTGCAGGCGCGC
AGGGCCACNGCTTCGTCCCCAGCCTGTTTGACGTCGACTCGCACGCTGGC
GCGATCGCCCAGGCTTTTTGATGGGGATGACGTGAAGCCNGTTCTGGCTG
GATTCACCGGCACGATCTTTATTTAAAATTCGGTGGCGGGGCAGGTCAAC
ATCTTTCCGGCCGGGGAGTTTTTCGGGTTGCCTGGCAGGGCCACCCCCGG
AGGTCCCCCCGCCC
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