EY728448

Overview
NameEY728448
Unique NameEY728448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: SSUB1_AGRT5 (Aliphatic sulfonates import ATP-binding protein ssuB 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ssuB1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  401 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEV 586
            +G V    RNV KSFG+K +LRG+   +R GE + +IG SG GKST+L+I+AGL  P  G V
Sbjct:   34 EGKVAFSFRNVTKSFGDKPVLRGIDLDVREGEFLAVIGKSGCGKSTLLRILAGLDTPTTGTV 95          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: RGMG2_BURCM (Putative ribose/galactose/methyl galactoside import ATP-binding protein 2 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_1305 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  407 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENV 706
            D L++ R V KSF     L GV F++R G    ++G +G GKST++KIIAG+  PD+GE+ I G +   L    +     I ++ Q   L   +TV EN+
Sbjct:   32 DCLLEVRGVGKSFPGVVALDGVQFRVRRGTVHALMGENGAGKSTLMKIIAGVYTPDQGEILING-EPVVLSGPLDALDRGIAMIHQELNLMPYMTVAENI 130          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: RBSA3_RHIL3 (Ribose import ATP-binding protein rbsA 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rbsA3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 39/98 (39.80%), Postives = 53/98 (54.08%), Query Frame = 2
Query:  413 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENV 706
            +++ RNV K FG    L  VSF +  GE   + G +G GKST++ IIAG+L P  G+V + G     + S      L +GLV Q  AL    TV EN+
Sbjct:    7 VLEIRNVSKHFGAVKALTEVSFSLEKGEVHALCGENGAGKSTLMNIIAGVLQPTEGDVLVDGAP-VKVTSPAVAQSLGLGLVHQEIALCPDATVAENM 103          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: POTA_CLOAB (Spermidine/putrescine import ATP-binding protein potA OS=Clostridium acetobutylicum GN=potA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 2
Query:  407 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGL-----XIGLVFQSAALFDSLTVRENV 706
            D+LI+ +NV K +GE ++++ ++  +R  E +  +GPSG GK+T L +IAG   PD G +         +  D  I+ +      I  VFQ  ALF  + V ENV
Sbjct:    4 DILIELKNVSKKYGENYVIKNLNLFVRRNEFLTFLGPSGCGKTTTLNMIAGFETPDEGNI---------IFEDSSINIVPPHKRQINTVFQKYALFSHMNVYENV 99          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: NODI_RHILO (Nod factor export ATP-binding protein I OS=Rhizobium loti GN=nodI PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 41/133 (30.83%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  308 PRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENV 706
            P DL     PA +     ++   +++  P+    V +D   V KS+G K ++  +SF +  GE  G++GP+G GKSTI +++ G+  PD G + + G     + +   ++   IG+V Q   L    TVREN+
Sbjct:    8 PEDLRRLETPAIERESHGQTSAKSSV--PDSASTVAVDFAGVTKSYGNKIVVDELSFSVASGECFGLLGPNGAGKSTIARMLLGMTCPDAGTITVLG---VPVPARARLARRGIGVVPQFDNLDQEFTVRENL 135          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: MACB_MARAV (Macrolide export ATP-binding/permease protein macB OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=macB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  413 LIDCRNVYKSFGEKH----ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDE--EISGLXIGLVFQSAALFDSLTVRENV 706
            LI+ +++ +SFGE      +L+G+  KI  GE V I+GPSG+GKST++ I+  L  P  G+    G   + L  DE   +     G VFQS  L   +T RENV
Sbjct:    6 LIELQDITRSFGEGELAVPVLKGIDLKIWPGEFVAIMGPSGSGKSTLMNILGCLDQPSAGQYRFNGRDVSALDRDELARLRRDAFGFVFQSYNLLPGMTARENV 109          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: LOLD_NITEU (Lipoprotein-releasing system ATP-binding protein lolD OS=Nitrosomonas europaea GN=lolD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  410 VLIDCRNVYKSFGEKH----ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGL---XIGLVFQSAALFDSLTVRENVGSFLY 721
            ++I CR++YKS+ + +    +L G+  ++  GE V I+G SG+GKST+L ++ GL  P RGEV +   +    IS+ E   L    +G V+Q   L    + +ENV   L+
Sbjct:    4 IIIACRDLYKSYFQGNLEVPVLHGIDLQVNEGEMVAIVGASGSGKSTLLHVLGGLDKPTRGEVTLL-DRELSTISEAERGSLRNHALGFVYQFHHLLPEFSAQENVAMPLF 113          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: CYSA_NEPOL (Sulfate/thiosulfate import ATP-binding protein cysA OS=Nephroselmis olivacea GN=cysA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  428 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENV 706
            N+ K+FG    L  V+ +++ G  V ++GPSG+GKST+L++IAGL   D G++++ G       +   I    IG VFQ+ ALF  L V +N+
Sbjct:    7 NISKTFGTFRALDHVNLEVKAGSLVALVGPSGSGKSTLLRMIAGLERADEGKIWLAGRD----ATYAPIQKRHIGFVFQNYALFKHLNVAKNI 95          
The following BLAST results are available for this feature:
BLAST of EY728448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
SSUB1_AGRT59.206e-1151.61Aliphatic sulfonates import ATP-binding protein ss... [more]
RGMG2_BURCM9.206e-1138.00Putative ribose/galactose/methyl galactoside impor... [more]
RBSA3_RHIL39.206e-1139.80Ribose import ATP-binding protein rbsA 3 OS=Rhizob... [more]
POTA_CLOAB9.206e-1135.24Spermidine/putrescine import ATP-binding protein p... [more]
NODI_RHILO9.206e-1130.83Nod factor export ATP-binding protein I OS=Rhizobi... [more]
MACB_MARAV9.206e-1139.42Macrolide export ATP-binding/permease protein macB... [more]
LOLD_NITEU9.206e-1135.14Lipoprotein-releasing system ATP-binding protein l... [more]
CYSA_NEPOL9.206e-1138.71Sulfate/thiosulfate import ATP-binding protein cys... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-H01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728448 ID=EY728448; Name=EY728448; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGAAACCCAGTAGTCGAAATGCTTCGAAAACCACTTTTTAT
GTGAACTTCCATTGATTATTTTATTTTTTTCATTTTGTGGTTTTTAGACC
AAATATCAATCTGCGTCTGCTTTACAATTATAAACACCGAAAATGGTCTC
TTTATCTTCATCTGGTTCACTGTTATTTCCTCTCGCAACAAAAAGTGTTA
GTTCTCGATTATCTAGACTTGCTAATTCGGACAAAAAACCGGTCAATTCG
TTCTGTTATAAGGCGAAAGAAGAACAGAGAAAAGTTGTTTGTGCTTGTGT
AGCGCCTCCAAGGGACTTGGGCACTGATGGATTCCCTGCCACCAAATTCA
ATGATTCATCTAAATCAGAGAATGTAAATACCTTATTCGAACCCGAGGAT
GATGGTGATGTTCTCATCGATTGTCGGAATGTTTACAAGTCATTTGGGGA
AAAGCATATATTGAGAGGTGTGAGCTTCAAGATTAGACATGGTGAAGCTG
TTGGTATAATAGGGCCTTCAGGCACTGGGAAATCAACGATTTTAAAGATT
ATTGCTGGGCTTCTTGCTCCAGACAGGGGAGAGGTTTACATTCGAGGTAN
GAAGAGAGCTGGTTTGATTAGCGATGAGGAGATATCTGGTCTTCNGATTG
GATTGGTTTTCCAAAGTGCGGCTCTTTTTGACTCATTGACTGTCCGGGAA
AATGTTGGTTCCTTTCTGTATGAAAATCCAAGATGCGTGATGAACAATTC
AGAACTGGTGAGAGAAATTGGCTGCTGTGGATTAANGGAGTTGAGGTCGC
TACCATCTTATTGTCTGTTGATGAAAAAAAATTGCTTTACTCCATCCTAA
TTTCGATACCACAGGAATA
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