EY728448

Overview
NameEY728448
Unique NameEY728448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: YFIL_BACSU (Uncharacterized ABC transporter ATP-binding protein yfiL OS=Bacillus subtilis GN=yfiL PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 2
Query:  413 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISG-LXIGLVFQSAALFDSLTVRENV 706
            ++   N+ K++G+K I++G+SF ++ GE+ G++GP+G GKST + +I+GL+  D G + + G     +I  E       IG+V Q  AL+ +LT  EN+
Sbjct:    1 MLQAENIKKAYGKKTIVKGISFSLKKGESFGLLGPNGAGKSTTISMISGLVPHDSGNITVGGY----VIGKETAKAKQKIGIVPQEIALYPTLTAHENL 95          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: POTA_LAWIP (Spermidine/putrescine import ATP-binding protein potA OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=potA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  413 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENV--GSFLYENPRCVMNNSELVRE 766
            +I+ +NV K F +   L  ++ +I +GE + ++GPSG GK+TIL+II+G   PD GE+ I G   +G   +       +  VFQ  ALF  +TVR+NV  G  + + PR  +N  ELV E
Sbjct:    7 IIELKNVSKIFEDTCALDNINLQIANGEFLTLLGPSGCGKTTILRIISGFETPDVGEILIAGVNVSGFPPERR----QVNTVFQHYALFPHMTVRDNVAFGLRMQKCPREKVN--ELVFE 120          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: POTA_DESDG (Spermidine/putrescine import ATP-binding protein potA OS=Desulfovibrio desulfuricans (strain G20) GN=potA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 2
Query:  407 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENVGSFLYENPRCVMNNSELVRE 766
            D + + R V K F +   L  +  +IR+GE + ++GPSG GK+TIL++++G   P  G+V + G     +++D       +  VFQ+ ALF  +TVR+NVG  L    R     +  VRE
Sbjct:    5 DYIFELRGVSKYFDDTCALENIDLQIRNGEFLTLLGPSGCGKTTILRLLSGFETPSSGDVILSGR----VVNDVPPEQRQVNTVFQNYALFPHMTVRDNVGFGLKMQKRPKDEIARRVRE 120          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: LSRA_SHIFL (Autoinducer 2 import ATP-binding protein lsrA OS=Shigella flexneri GN=lsrA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  413 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENVGSFLYENPRCVMNNSELVREIGC 775
            L+  R+VYK +   ++L+G+ F +  GE   ++G +G GKST++KIIAG+   D G + I G   A L +      L I LV Q   LF SL+++EN+   L +    +     L+  +GC
Sbjct:   11 LLCARSVYKQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIGGNNYARL-TPVHAHQLGIYLVPQEPLLFPSLSIKENILFGLAKKQLSMQKMKNLLAALGC 130          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: LSRA_SHIF8 (Autoinducer 2 import ATP-binding protein lsrA OS=Shigella flexneri serotype 5b (strain 8401) GN=lsrA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  413 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENVGSFLYENPRCVMNNSELVREIGC 775
            L+  R+VYK +   ++L+G+ F +  GE   ++G +G GKST++KIIAG+   D G + I G   A L +      L I LV Q   LF SL+++EN+   L +    +     L+  +GC
Sbjct:   11 LLCARSVYKQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIGGNNYARL-TPVHAHQLGIYLVPQEPLLFPSLSIKENILFGLAKKQLSMQKMKNLLAALGC 130          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: LSRA_ECOLC (Autoinducer 2 import ATP-binding protein lsrA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lsrA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  413 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENVGSFLYENPRCVMNNSELVREIGC 775
            L+  R+VYK +   ++L+G+ F +  GE   ++G +G GKST++KIIAG+   D G + I G   A L +      L I LV Q   LF SL+++EN+   L +    +     L+  +GC
Sbjct:   11 LLCARSVYKQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIGGNNYARL-TPVHAHQLGIYLVPQEPLLFPSLSIKENILFGLAKKQLSMQKMKNLLAALGC 130          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: FBPC_PASMU (Fe(3+) ions import ATP-binding protein fbpC OS=Pasteurella multocida GN=fbpC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 35/95 (36.84%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  425 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENVG 709
            +NV K+FG+  ++  +   I+ G  V ++GPSG GK+T+L+++AGL +P  G+++I G      ++   I    I +VFQS ALF  +++ +NVG
Sbjct:   10 KNVTKAFGKAVVIDNLDLSIKRGTMVTLLGPSGCGKTTVLRLVAGLESPTSGQIFIDGED----VTKSSIQNRDICIVFQSYALFPHMSIGDNVG 100          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: UGPC2_RHIEC (sn-glycerol-3-phosphate import ATP-binding protein ugpC 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ugpC2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  416 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENVG 709
            I  R+V KS+G+  ++ GV  +I+ GE + I+GPSG GKST+L++IAGL     GE+ I G     +++  E       +VFQ+ AL+  +TV EN+G
Sbjct:    4 ISIRDVKKSYGKHPVVHGVDLEIQSGEFIVILGPSGCGKSTLLRMIAGLEEITGGEIAIDGR----VVNQMEPRERGCAMVFQNYALYPHMTVAENIG 97          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: POTA_FUSNN (Spermidine/putrescine import ATP-binding protein potA OS=Fusobacterium nucleatum subsp. nucleatum GN=potA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  416 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGL-----XIGLVFQSAALFDSLTVRENV 706
            I+  NV KSF    IL+ ++ KI  GE   IIGPSG GK+T+L++IAG ++PD G +Y         + DE I  L      +  +FQ  ALF  L V ENV
Sbjct:    6 INIVNVNKSFDGVQILKDINLKIEQGEFFSIIGPSGCGKTTLLRMIAGFISPDSGAIY---------LGDENIVNLPPNLRNVNTIFQKYALFPHLNVFENV 98          
BLAST of EY728448 vs. ExPASy Swiss-Prot
Match: LSRA_ECOSM (Autoinducer 2 import ATP-binding protein lsrA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lsrA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  413 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIRGXKRAGLISDEEISGLXIGLVFQSAALFDSLTVRENVGSFLYENPRCVMNNSELVREIGC 775
            L+  R+VYK +   ++L+G+ F +  GE   ++G +G GKST++KIIAG+   D G + I G     L +      L I LV Q   LF SL+++EN+   L +    +   + L+  +GC
Sbjct:   11 LLCARSVYKQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIGGNNYVRL-TPVHAHQLGIYLVPQEPLLFPSLSIKENILFGLAKKQLSIQKMNNLLAALGC 130          
The following BLAST results are available for this feature:
BLAST of EY728448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
YFIL_BACSU2.191e-1236.36Uncharacterized ABC transporter ATP-binding protei... [more]
POTA_LAWIP2.191e-1239.17Spermidine/putrescine import ATP-binding protein p... [more]
POTA_DESDG2.191e-1235.00Spermidine/putrescine import ATP-binding protein p... [more]
LSRA_SHIFL2.191e-1234.71Autoinducer 2 import ATP-binding protein lsrA OS=S... [more]
LSRA_SHIF82.191e-1234.71Autoinducer 2 import ATP-binding protein lsrA OS=S... [more]
LSRA_ECOLC2.191e-1234.71Autoinducer 2 import ATP-binding protein lsrA OS=E... [more]
FBPC_PASMU2.191e-1236.84Fe(3+) ions import ATP-binding protein fbpC OS=Pas... [more]
UGPC2_RHIEC2.862e-1240.82sn-glycerol-3-phosphate import ATP-binding protein... [more]
POTA_FUSNN2.862e-1242.16Spermidine/putrescine import ATP-binding protein p... [more]
LSRA_ECOSM2.862e-1233.88Autoinducer 2 import ATP-binding protein lsrA OS=E... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-H01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728448 ID=EY728448; Name=EY728448; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGAAACCCAGTAGTCGAAATGCTTCGAAAACCACTTTTTAT
GTGAACTTCCATTGATTATTTTATTTTTTTCATTTTGTGGTTTTTAGACC
AAATATCAATCTGCGTCTGCTTTACAATTATAAACACCGAAAATGGTCTC
TTTATCTTCATCTGGTTCACTGTTATTTCCTCTCGCAACAAAAAGTGTTA
GTTCTCGATTATCTAGACTTGCTAATTCGGACAAAAAACCGGTCAATTCG
TTCTGTTATAAGGCGAAAGAAGAACAGAGAAAAGTTGTTTGTGCTTGTGT
AGCGCCTCCAAGGGACTTGGGCACTGATGGATTCCCTGCCACCAAATTCA
ATGATTCATCTAAATCAGAGAATGTAAATACCTTATTCGAACCCGAGGAT
GATGGTGATGTTCTCATCGATTGTCGGAATGTTTACAAGTCATTTGGGGA
AAAGCATATATTGAGAGGTGTGAGCTTCAAGATTAGACATGGTGAAGCTG
TTGGTATAATAGGGCCTTCAGGCACTGGGAAATCAACGATTTTAAAGATT
ATTGCTGGGCTTCTTGCTCCAGACAGGGGAGAGGTTTACATTCGAGGTAN
GAAGAGAGCTGGTTTGATTAGCGATGAGGAGATATCTGGTCTTCNGATTG
GATTGGTTTTCCAAAGTGCGGCTCTTTTTGACTCATTGACTGTCCGGGAA
AATGTTGGTTCCTTTCTGTATGAAAATCCAAGATGCGTGATGAACAATTC
AGAACTGGTGAGAGAAATTGGCTGCTGTGGATTAANGGAGTTGAGGTCGC
TACCATCTTATTGTCTGTTGATGAAAAAAAATTGCTTTACTCCATCCTAA
TTTCGATACCACAGGAATA
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