EY728438

Overview
NameEY728438
Unique NameEY728438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728438 vs. ExPASy Swiss-Prot
Match: PRS1_SOLTU (Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.515e-19
Identity = 55/146 (37.67%), Postives = 85/146 (58.22%), Query Frame = 3
Query:   66 PEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 497
            P +LFK  V+  D L+PK++PQV KN+E      G GSIKK  FVEG+  KY KH++  +D +N +  Y+ IEG+  GD     ++ +SY+ K     +GG     + +++ K    +K+E    G ++   +FK +EAY LANP+
Sbjct:   16 PTRLFKALVVDSDNLIPKLMPQV-KNIEA----EGDGSIKKMTFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGD----KLESISYDLKFEAHGNGGCVCKSIAEYHTKGDYVLKDEDHNEGKKQGMELFKIVEAYLLANPS 152          
BLAST of EY728438 vs. ExPASy Swiss-Prot
Match: ALL1_APIGR (Major allergen Api g 1 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.285e-19
Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   54 STLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 491
            S++  EK+F+ FV+  DT+LPK  P   K+VE I GDGGPG++K     +G        R+D ++KE   ++Y+ I+G  D  +  I+ +     +V T DGGS       F+ K  A + EE +K   E+   +FKALEAY +AN
Sbjct:   12 SSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVIDG--DILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154          
BLAST of EY728438 vs. ExPASy Swiss-Prot
Match: DAU1_DAUCA (Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.015e-17
Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   54 STLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 491
            S++  EK+F   VL  DT++PK  P   K+VE + GDGG G+++     EG+       R DA++KE   Y+ T I+G  D  +  I+ +     VV T DGGS +     F+ K  A + EE +K    +   +FKA+EAY +AN
Sbjct:   12 SSVSAEKIFSGIVLDVDTVIPKAAPGAYKSVE-VKGDGGAGTVRIITLPEGSPITSMTVRTDAVNKEALTYDSTVIDG--DILLGFIESIETHLVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154          
The following BLAST results are available for this feature:
BLAST of EY728438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PRS1_SOLTU2.515e-1937.67Pathogenesis-related protein STH-21 OS=Solanum tub... [more]
ALL1_APIGR3.285e-1937.67Major allergen Api g 1 OS=Apium graveolens PE=1 SV... [more]
DAU1_DAUCA4.015e-1736.30Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-F12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728438 ID=EY728438; Name=EY728438; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCTTAGACATCATGGGTGTTCTCACGTTGAATGTAGAGGA
TACAGCACTCTCCCCCCTGAAAAGTTGTTCAAACTTTTTGTCCTTCAGTT
CGACACCCTTCTGCCCAAAGTCCTGCCTCAGGTTGTAAAGAACGTTGAAT
TGATTTCAGGGGATGGAGGCCCTGGAAGCATCAAGAAGTTTAACTTTGTT
GAAGGTGCTGATTGGAAGTACTTTAAGCATAGGGTTGATGCATTGGACAA
AGAGAACAAGATATACAATTACACGGCAATTGAAGGTGAGGGTGATGCTA
ACATCCCTACTATTGATCATGTTTCTTATGAGAGTAAGGTTGTGGGCACC
CCTGACGGAGGAAGCAAGAGCACCGTTGTTATCAAGTTCTATCCCAAACC
AGGTGCCGAGATTAAGGAAGAGCAGGTTAAGGGAGGCTTGGAAAAGGAGA
AGGGAATTTTTAAGGCTCTGGAAGCCTATGCCTTGGCAAACCCCAATGCC
GTATAAGCTCTTACGTCAACACTTCACCGCACTTGCGTCGCCTTTGTTGC
AACATTATGAATAATCATGTNTATGGCTTCCGTATGTCGTGTCTCTTTGT
NTTCANATATTGCCATTTATATAATTGGCTTTTGGCTAAATAAAAAAAAA
AAAGAGTTTGCTTTTCCCTTTATCTTATTGAACTTCATCATTATAAATAA
TGCGGTGGCAGAGATCACGATCATCAATCAACTGCAGAGGAAATGTAGAC
TTATTTACAATAAGCTTGGATAAAGTTGTACCTCAGTCTGTAGTATTGAT
GGATGATCATCACTGTCTAATATTATCCATTATGACATTTAGATTAAATG
AATTAACCCGTATTCGATAAAAAAAAAAAAAAAAAAGGCGGG
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