EY728437

Overview
NameEY728437
Unique NameEY728437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8169 contig Csv1_Contig8169:34..614. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_AZOSB (Error-prone DNA polymerase OS=Azoarcus sp. (strain BH72) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.170e-19
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPGTA GV FVTLEDE G+ NVVV+  LAERQR+ L+G+RLL V G+ +  GEV HL+A RL DL+P + G++ RSRDF
Sbjct:  985 RPGTAQGVIFVTLEDETGSANVVVYAGLAERQRRELLGARLLGVFGQLQREGEVVHLLAKRLVDLSPWVGGLAARSRDF 1063          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_XANOR (Error-prone DNA polymerase OS=Xanthomonas oryzae pv. oryzae GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.584e-19
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RP TA G  FVTLEDE G INV+VW  LA R+R+AL+ SRLL V GRWE V  V HLIAG L DL+ LL  + + SRDF
Sbjct: 1004 RPATAKGTIFVTLEDEHGMINVIVWSHLALRRRRALLESRLLAVRGRWERVDGVEHLIAGDLHDLSDLLGDMQLPSRDF 1082          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_XANOP (Error-prone DNA polymerase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.584e-19
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RP TA G  FVTLEDE G INV+VW  LA R+R+AL+ SRLL V GRWE V  V HLIAG L DL+ LL  + + SRDF
Sbjct: 1004 RPATAKGTIFVTLEDEHGMINVIVWSHLALRRRRALLESRLLAVRGRWERVDGVEHLIAGDLHDLSDLLGDMQLPSRDF 1082          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_XANCP (Error-prone DNA polymerase OS=Xanthomonas campestris pv. campestris GN=dnaE2 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.584e-19
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RP TA G  FVTLEDE G INV+VW  LA R+R+AL+ SRLL V GRWE V  V HLIAG L DL+ LL  + + SRDF
Sbjct: 1003 RPATAKGTIFVTLEDEHGMINVIVWSHLAMRRRRALLESRLLAVRGRWERVDGVEHLIAGDLYDLSDLLGEMQLPSRDF 1081          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_XANCB (Error-prone DNA polymerase OS=Xanthomonas campestris pv. campestris (strain B100) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.584e-19
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RP TA G  FVTLEDE G INV+VW  LA R+R+AL+ SRLL V GRWE V  V HLIAG L DL+ LL  + + SRDF
Sbjct: 1003 RPATAKGTIFVTLEDEHGMINVIVWSHLAMRRRRALLESRLLAVRGRWERVDGVEHLIAGDLYDLSDLLGEMQLPSRDF 1081          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_XANC8 (Error-prone DNA polymerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dnaE2 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.584e-19
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RP TA G  FVTLEDE G INV+VW  LA R+R+AL+ SRLL V GRWE V  V HLIAG L DL+ LL  + + SRDF
Sbjct: 1003 RPATAKGTIFVTLEDEHGMINVIVWSHLAMRRRRALLESRLLAVRGRWERVDGVEHLIAGDLYDLSDLLGEMQLPSRDF 1081          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_VIBVY (Error-prone DNA polymerase OS=Vibrio vulnificus (strain YJ016) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.294e-18
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    6 PGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            PGTA+GVTF TLED+ GNINVVVW+  +  Q+QA + +RLL V G  E  G+V H+IAGRL DLT  LSG+S +SR+F
Sbjct:  946 PGTAAGVTFFTLEDDTGNINVVVWQATSRAQKQAYLTARLLMVKGILEREGDVIHVIAGRLVDLTEKLSGLSPKSREF 1023          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_XANC5 (Error-prone DNA polymerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.689e-18
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RP TA G  FVTLEDE G INV+VW  LA R+R+AL+ SRLL V GRWE V  V HLIAG L DL+ LL  + + SRDF
Sbjct: 1003 RPATAKGTIFVTLEDEQGMINVIVWSHLALRRRRALLESRLLAVRGRWERVDGVEHLIAGDLYDLSNLLGDMQLPSRDF 1081          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_XANAC (Error-prone DNA polymerase OS=Xanthomonas axonopodis pv. citri GN=dnaE2 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.689e-18
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RP TA G  FVTLEDE G INV+VW  LA R+R+AL+ SRLL V GRWE V  V HLIAG L DL+ LL  + + SRDF
Sbjct: 1004 RPATAKGTIFVTLEDEQGMINVIVWSHLALRRRRALLESRLLAVRGRWERVDGVEHLIAGDLYDLSNLLGDMQLPSRDF 1082          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_VIBVU (Error-prone DNA polymerase OS=Vibrio vulnificus GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.689e-18
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    6 PGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            PGTA+GVTF TLED+ GNINVVVW+  +  Q+QA + +RLL V G  E  G+V H+IAGRL DLT  LSG+S +SR+F
Sbjct:  946 PGTAAGVTFFTLEDDTGNINVVVWQATSRAQKQAYLTARLLMVKGILEREGDVIHVIAGRLIDLTEKLSGLSPKSREF 1023          
The following BLAST results are available for this feature:
BLAST of EY728437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
DNAE2_AZOSB1.170e-1962.03Error-prone DNA polymerase OS=Azoarcus sp. (strain... [more]
DNAE2_XANOR7.584e-1962.03Error-prone DNA polymerase OS=Xanthomonas oryzae p... [more]
DNAE2_XANOP7.584e-1962.03Error-prone DNA polymerase OS=Xanthomonas oryzae p... [more]
DNAE2_XANCP7.584e-1962.03Error-prone DNA polymerase OS=Xanthomonas campestr... [more]
DNAE2_XANCB7.584e-1962.03Error-prone DNA polymerase OS=Xanthomonas campestr... [more]
DNAE2_XANC87.584e-1962.03Error-prone DNA polymerase OS=Xanthomonas campestr... [more]
DNAE2_VIBVY1.294e-1860.26Error-prone DNA polymerase OS=Vibrio vulnificus (s... [more]
DNAE2_XANC51.689e-1862.03Error-prone DNA polymerase OS=Xanthomonas campestr... [more]
DNAE2_XANAC1.689e-1862.03Error-prone DNA polymerase OS=Xanthomonas axonopod... [more]
DNAE2_VIBVU1.689e-1860.26Error-prone DNA polymerase OS=Vibrio vulnificus GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-F10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728437 ID=EY728437; Name=EY728437; organism=Citrus sinensis; type=EST; length=581bp
AACGTCCGGGCACGGCCAGCGGCGTCACCTTCGTCACCCTGGAAGATGAG
TTCGGCAATATCAATGTGGTGGTCTGGCGCGATTTGGCCGAGCGGCAGCG
CCAGGCGCTGGTGGGCTCGCGGTTGCTCAAAGTCGATGGCCGCTGGGAGG
CGGTGGGGGAGGTTCGGCACCTGATCGCCGGGCGCCTGACCGACCTGACC
CCGCTGCTGTCGGGCATCAGTGTGCGCAGCCGGGATTTTCGCTGATCCGG
CTCTTGCTCCTTCATGGCCGCATAAGCAATATGCGATGAAACCAACCGCC
GCTGTCGGGCTCAAAGTTTTCATCGCCGCCCACCTTTTATCTTTTGCAGA
GCCGACTGATGCAGTTTTTATCCGATACCCATGGCTGTGATGGCTGGGCT
GGGGAAATGGCCCAAAGGATTCGCGCATTCGATTGGTCCGGCACCGACCT
CGGCCCGATTGGTGCCTGGCCCTCCANCCTGGTCAGCGCCGTGCAGATGA
TGCTGGCATCGCCCATCCCTATGGTCATGCTGTGGGGAAGGGCGGGTTAC
ATGATCTACAACGACAGCTATTCCGTGTTTG
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