EY728437

Overview
NameEY728437
Unique NameEY728437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8169 contig Csv1_Contig8169:34..614. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_RALPJ (Error-prone DNA polymerase OS=Ralstonia pickettii (strain 12J) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.420e-18
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPGTA+G  FV++EDE G INV++W  L ERQR+ ++ ++LL V G+W+   E RHL+A  L DLTPLL  ++  SRDF
Sbjct: 1000 RPGTANGTIFVSIEDETGAINVILWPHLIERQRREVLNAQLLGVYGKWQCERETRHLVAQHLVDLTPLLGRLATSSRDF 1078          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_RALSO (Error-prone DNA polymerase OS=Ralstonia solanacearum GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.095e-17
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPGTA G  FV++EDE G +NVV+W  L ERQR+ ++ +RLL V G+W+   E RHL+A  L DLTPLL  ++  SRDF
Sbjct:  996 RPGTAKGTIFVSIEDETGAVNVVLWPRLIERQRREVLHARLLGVYGKWQCERETRHLVAQHLVDLTPLLGRLASSSRDF 1074          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_BURPS (Error-prone DNA polymerase OS=Burkholderia pseudomallei GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.440e-17
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 3
Query:    6 PGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            PGTA GV FVTLEDE G +NV+V  +L ERQR+  + S+LL V G W+   +VRHL+A  L DLTPL++G+   SR+F
Sbjct:  994 PGTAKGVLFVTLEDETGCVNVIVRPELLERQRRETLDSQLLAVSGVWQCESDVRHLVAQYLEDLTPLIAGLRTESREF 1071          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_BURMA (Error-prone DNA polymerase OS=Burkholderia mallei GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.440e-17
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 3
Query:    6 PGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            PGTA GV FVTLEDE G +NV+V  +L ERQR+  + S+LL V G W+   +VRHL+A  L DLTPL++G+   SR+F
Sbjct:  985 PGTAKGVLFVTLEDETGCVNVIVRPELLERQRRETLDSQLLAVSGVWQCESDVRHLVAQYLEDLTPLIAGLRTESREF 1062          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_VIBPA (Error-prone DNA polymerase OS=Vibrio parahaemolyticus GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    6 PGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            PGTA+GVTF TLED+ GNINVVVW   A  Q+QA + S++L V G  E  GEV H+IAG+L D T  LS +  +SRDF
Sbjct:  946 PGTAAGVTFFTLEDDTGNINVVVWSATARAQKQAYLTSKILMVKGILEREGEVIHVIAGKLIDCTHYLSNLQSKSRDF 1023          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_VIBHB (Error-prone DNA polymerase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 3
Query:    6 PGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            PGTA+GVTF TLED+ GNINVVVWR  A  Q+QA + S++L V G  E  GEV H+IAG+L D T  L+ +  +SRDF
Sbjct:  946 PGTAAGVTFFTLEDDTGNINVVVWRATARAQKQAYLTSKVLMVKGILEREGEVTHVIAGKLIDCTHNLAELKSKSRDF 1023          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_SACD2 (Error-prone DNA polymerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPGTA G  F+TLEDE GNIN+VVW    ER RQAL+ ++LL V GR E    V H+IAG++ D + +LS   ++SRDF
Sbjct:  950 RPGTAKGTLFLTLEDETGNINIVVWTSTQERCRQALLTAKLLLVKGRLETKDNVTHIIAGQMFDYSHMLSEFDIKSRDF 1028          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_GLUOX (Error-prone DNA polymerase OS=Gluconobacter oxydans GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.283e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGIS-VRSRDFR 242
            RPGTA+G  FVT+EDE G  N++VW+D+ E+ R+ L+ SRLL   GR +  G+V H++   L D TPLL G   +++RDFR
Sbjct:  821 RPGTANGTMFVTIEDETGTANLIVWKDVQEKYRRPLLASRLLACKGRLQKEGDVIHVVVLSLEDRTPLLQGSEPLKARDFR 901          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_DECAR (Error-prone DNA polymerase OS=Dechloromonas aromatica (strain RCB) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.982e-15
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPGTA+G+ FVTLEDE G  NVVV   L E+QR+ L+GS LL V G+ +  GEV HL+A RL DL+  L  +   SRDF
Sbjct:  948 RPGTATGIVFVTLEDETGLSNVVVHPQLVEKQRRELLGSTLLGVYGQLQVEGEVVHLVAKRLVDLSAWLGRLETVSRDF 1026          
BLAST of EY728437 vs. ExPASy Swiss-Prot
Match: DNAE2_METCA (Error-prone DNA polymerase OS=Methylococcus capsulatus GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.895e-15
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDFR 242
            RP TA+G TFVT+EDE G IN++VW   A+ QR+AL+ + LL V G  +    V HL+AGRL D+   L G+ V+SRDF+
Sbjct:  968 RPMTANGTTFVTIEDETGQINLIVWPATAQAQRRALLRAHLLAVSGTVQQEEGVLHLVAGRLEDIGKWLDGLVVKSRDFQ 1047          
The following BLAST results are available for this feature:
BLAST of EY728437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
DNAE2_RALPJ6.420e-1853.16Error-prone DNA polymerase OS=Ralstonia pickettii ... [more]
DNAE2_RALSO1.095e-1754.43Error-prone DNA polymerase OS=Ralstonia solanacear... [more]
DNAE2_BURPS2.440e-1755.13Error-prone DNA polymerase OS=Burkholderia pseudom... [more]
DNAE2_BURMA2.440e-1755.13Error-prone DNA polymerase OS=Burkholderia mallei ... [more]
DNAE2_VIBPA4.161e-1757.69Error-prone DNA polymerase OS=Vibrio parahaemolyti... [more]
DNAE2_VIBHB4.161e-1757.69Error-prone DNA polymerase OS=Vibrio harveyi (stra... [more]
DNAE2_SACD24.161e-1754.43Error-prone DNA polymerase OS=Saccharophagus degra... [more]
DNAE2_GLUOX2.283e-1549.38Error-prone DNA polymerase OS=Gluconobacter oxydan... [more]
DNAE2_DECAR2.982e-1555.70Error-prone DNA polymerase OS=Dechloromonas aromat... [more]
DNAE2_METCA3.895e-1551.25Error-prone DNA polymerase OS=Methylococcus capsul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-F10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728437 ID=EY728437; Name=EY728437; organism=Citrus sinensis; type=EST; length=581bp
AACGTCCGGGCACGGCCAGCGGCGTCACCTTCGTCACCCTGGAAGATGAG
TTCGGCAATATCAATGTGGTGGTCTGGCGCGATTTGGCCGAGCGGCAGCG
CCAGGCGCTGGTGGGCTCGCGGTTGCTCAAAGTCGATGGCCGCTGGGAGG
CGGTGGGGGAGGTTCGGCACCTGATCGCCGGGCGCCTGACCGACCTGACC
CCGCTGCTGTCGGGCATCAGTGTGCGCAGCCGGGATTTTCGCTGATCCGG
CTCTTGCTCCTTCATGGCCGCATAAGCAATATGCGATGAAACCAACCGCC
GCTGTCGGGCTCAAAGTTTTCATCGCCGCCCACCTTTTATCTTTTGCAGA
GCCGACTGATGCAGTTTTTATCCGATACCCATGGCTGTGATGGCTGGGCT
GGGGAAATGGCCCAAAGGATTCGCGCATTCGATTGGTCCGGCACCGACCT
CGGCCCGATTGGTGCCTGGCCCTCCANCCTGGTCAGCGCCGTGCAGATGA
TGCTGGCATCGCCCATCCCTATGGTCATGCTGTGGGGAAGGGCGGGTTAC
ATGATCTACAACGACAGCTATTCCGTGTTTG
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