EY728434

Overview
NameEY728434
Unique NameEY728434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_THEP1 (Glucose-1-phosphate adenylyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 48/183 (26.23%), Postives = 98/183 (53.55%), Query Frame = 1
Query:   55 AYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII-KDALIPSGTII 597
            A+ +DGYW D+GT+ +++ ANL +   P+P F+ YD +   +T    +PP+ +   + V+ S++ EG  +    + +SV+     I  G +++++++M      T A+             IG+N +++  II ++ +IG+NV++     V E A       + SG++T++  +++IP   +I
Sbjct:  235 AFRFDGYWRDVGTLRSYWEANLELV-LPVPPFNLYDPNWRFFTHTEEMPPAYVAPGSKVSTSLVSEGAEVYG-NVFNSVIFQGVKIGRGTVVKNSVIM------TRAE-------------IGENCYLENVIIAESVKIGNNVRM----GVGEDAENKLDPKVYSGLLTVVGMNSVIPDDMVI 392          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_MYCSS (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium sp. (strain MCS) GN=glgC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 1
Query:   10 GEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 471
            G++IP   S GM   A +YD              GYW D+GT++AFY+A++ +     P F+ Y++  PI  +   L P+K ++     +SV+G G +I    + +SV+     I +GAI+E +++M                       IG+ + ++ AI+DKN  +G
Sbjct:  227 GDIIPRLVSDGM---AAVYDFSNNEVPGATERDHGYWRDVGTLDAFYDAHMDLVSVH-PIFNLYNKRWPIRGESENLAPAKFVNGGSAQESVVGAGSIISAASVRNSVLSSNVYIDDGAIVEGSVIMPG-------------------TRIGRGAVVRHAILDKNVVVG 372          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_MYCGI (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium gilvum (strain PYR-GCK) GN=glgC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 47/169 (27.81%), Postives = 82/169 (48.52%), Query Frame = 1
Query:   10 GEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 471
            G++IP   + GM   A +YD              GYW D+GT++AFY+A++ +     P F+ Y++  PI      L P+K ++     +SV+G G +I    + +SV+     I +GAI+E +++M                     + IG+ + ++ AI+DKN  +G
Sbjct:  227 GDIIPRLVADGM---ASVYDFNNNEVPGATERDHGYWRDVGTLDAFYDAHMDLVSVH-PIFNLYNKRWPIRGGAENLAPAKFVNGGSAQESVVGAGSIISAASVRNSVLSSNVAIDDGAIVEGSVIMPG-------------------VRIGRGAVVRHAILDKNVVVG 372          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_STRGC (Glucose-1-phosphate adenylyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=glgC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 49/164 (29.88%), Postives = 85/164 (51.83%), Query Frame = 1
Query:   16 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 504
            VIP     G  V AY + GYW+D+GT+E+ + AN+     P       +R   IY++    PP+ + + A V DS++ +GC +    + HS++   + + + A+IED+++M                 G++   IG+ + IKRAII + A I + V+I  ++ V
Sbjct:  222 VIPNYLESGESVYAYEFAGYWKDVGTVESLWEANMEYI-NPENALDSRNRRWKIYSRNLISPPNFLSENAKVEDSLVVDGCFVDG-TVKHSILSTGAQVRKDAVIEDSVIM----------------SGAI---IGQGAKIKRAIIGEGAIIAEGVEIDGTEEV 364          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_NITEU (Glucose-1-phosphate adenylyltransferase OS=Nitrosomonas europaea GN=glgC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 48/209 (22.97%), Postives = 95/209 (45.45%), Query Frame = 1
Query:   13 EVIPGATSIGMRVQAYLYDG----------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 588
            +VIP   +   RV A+ +            YW D+GT++A++ AN+ +T    PD + YD   PI+T    LPP+K +  D        DS++  GC+I    +  S++     I   + IED++++                     + I +++++KR +++K  +I + +K+  N D       +   +++    +T+I   ++  G
Sbjct:  246 DVIPRLVASNARVYAHRFQNSCVNMASGVPYWRDVGTVDAYWKANIDLT-TITPDLNLYDEDWPIWTHQEQLPPAKFVFDDDDRRGQALDSMVSGGCIISGATVRRSLLFSNVQIRGYSTIEDSVIL-------------------PNVSIDRHAYLKRVVVEKECQIPEGLKVGFNPD------EDRKHFYVTDDGITLITPEMLGQG 428          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_GEOMG (Glucose-1-phosphate adenylyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 52/171 (30.41%), Postives = 85/171 (49.71%), Query Frame = 1
Query:   70 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSK-MLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFI-KSGIVTI 561
            GYW+D+GTI+++Y AN+ +     P  + Y+   PI T     PP+K + D D       DS +  GC+     +  S+VG  + ++  +++ED++L     +E               + +G+N  I+RAIIDKN  I D   I   D  ++  R   GY + +SGIV +
Sbjct:  262 GYWKDVGTIDSYYEANMELIHVS-PQLNLYNYKWPILTNQGNYPPAKTVFDEDGRRGMNIDSYVCAGCITSGSVVRRSIVGPLTKVNSYSLVEDSIL-----FEN--------------VNVGRNVKIRRAIIDKNITIPDGTTI-GYDHGEDRRR---GYTVTESGIVVV 408          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_CLONN (Glucose-1-phosphate adenylyltransferase OS=Clostridium novyi (strain NT) GN=glgC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 56/188 (29.79%), Postives = 94/188 (50.00%), Query Frame = 1
Query:   16 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI--TKKPIPDFSFYDRSAPIYTQPRYLPPSKM-LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKD 570
            +IP     G  + AY ++GYW+D+GTIE+ + AN+ +  TK P+     Y+++  IY+     PP     +A + +S++ EGC +   KI +SV+     +   +II+D+++M                     + IG+N  I++ II  N  I +N  I NSD +       DG  IK+   +IIK+
Sbjct:  223 IIPSLLDSGYNLYAYSFNGYWKDVGTIESLWQANMDLLDTKNPL---DIYNKNWKIYSVSPSKPPQYTGPNAIIQNSLVVEGCAVFG-KIQNSVLFPEVEVGSNSIIQDSVIMS-------------------NVKIGQNVIIRKCIIGSNTIIENNSVIGNSDDITVIG---DGEKIKTN--SIIKN 382          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_ACTSZ (Glucose-1-phosphate adenylyltransferase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=glgC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 41/143 (28.67%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   73 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 486
            YW D+GT+++++ +N+ +  K  P    YD++ PI   P    PSK    D     V +S+I  GCVI N  I +SV+     ++EG +I++++++                     + +GKN  +KR I+D++ +I D ++I
Sbjct:  268 YWRDVGTLDSYWQSNIDLVSKE-PQLDIYDQTWPIRGNPVQAYPSKFFYDDPACKQVDNSLIAGGCVITNASISYSVLFDNIHVNEGTLIDESVIL-------------------PQVKVGKNCILKRCIVDRHVQIPDGMQI 390          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_THEYD (Glucose-1-phosphate adenylyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 45/147 (30.61%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   49 VQAYLYDGYWEDIGTIEAFYNANLGIT-KKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 486
            +++Y   GYW D+GTI A+++A++ +  +KPI  F  Y++  PI+      PP K+LD ++ +S+I EG +I   KI +S +   S I +   I+D+L+M                     + I +NS + R I+DK   + +  KI
Sbjct:  249 IKSYEERGYWRDVGTISAYFDAHMDMLGEKPI--FEIYNKMWPIHPARYEGPPVKILDGEIKNSIIAEGALIYGGKIENSFIRSGSIIEKDVEIKDSLIMD-------------------DVIIKRNSKLYRVIVDKKNVVYEGEKI 374          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_COREF (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium efficiens GN=glgC PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 53/194 (27.32%), Postives = 91/194 (46.91%), Query Frame = 1
Query:    7 SGEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR-YLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIKDALI 579
            S  ++PGAT            GYW D+GTI+AFY  ++ +     P F+ Y++  PI+T     LPP+K +   +   S++  G +I    + +SV+     + EGA +E  +LM                     + IGK + ++ AI+DKN  + D   I V+ D   +  + + G     G+VT+ K+ ++
Sbjct:  249 SRNIVPGATERDK--------GYWRDVGTIDAFYECHMDLISVH-PIFNLYNKEWPIHTTVEGNLPPAKFVQGGIAQSSMVAPGSIISAGTVRNSVLSTDVIVEEGATVEGAVLMPG-------------------VRIGKGAVVRHAILDKNVVVRDGELIGVDHDRDSQRFKVSAG-----GVVTVGKNQVV 409          
The following BLAST results are available for this feature:
BLAST of EY728434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
GLGC_THEP12.318e-1226.23Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_MYCSS2.318e-1228.40Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCGI3.027e-1227.81Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_STRGC3.954e-1229.88Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_NITEU3.954e-1222.97Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_GEOMG5.164e-1230.41Glucose-1-phosphate adenylyltransferase OS=Geobact... [more]
GLGC_CLONN5.164e-1229.79Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_ACTSZ5.164e-1228.67Glucose-1-phosphate adenylyltransferase OS=Actinob... [more]
GLGC_THEYD6.744e-1230.61Glucose-1-phosphate adenylyltransferase OS=Thermod... [more]
GLGC_COREF6.744e-1227.32Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-F07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728434 ID=EY728434; Name=EY728434; organism=Citrus sinensis; type=EST; length=899bp
CACGCGTCCGGTGAAGTTATCCCTGGTGCAACTTCCATTGGGATGAGAGT
GCAAGCATATTTATATGATGGCTACTGGGAAGACATTGGAACAATTGAGG
CTTTCTACAATGCGAATCTGGGGATCACCAAAAAGCCAATTCCGGATTTC
AGCTTCTATGACCGTTCTGCTCCAATTTATACACAGCCTAGATATCTACC
TCCTTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTAATTGGTGAAG
GCTGTGTGATTAAGAATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGA
TCTTGCATATCAGAAGGTGCAATTATCGAAGATACTTTACTTATGGGAGC
AGATTATTATGAGACAGACGCGGACAGGAGGTTTTTGGCTGCAAAGGGTA
GTGTTCCAATTGGTATTGGCAAGAATTCTCACATCAAGAGAGCAATAATT
GACAAAAATGCTCGAATTGGGGATAATGTGAAGATCGTCAACAGTGACAG
TGTGCAAGAAGCAGCAAGGGAAACAGATGGATACTTCATCAAGAGCGGGA
TTGTCACAATAATCAAGGATGCCTTGATTCCCAGTGGAACCATAATCTAN
ACTGTCGTCTTCTCAGTTTCATCCCAAGCTGCGCTGCTGCGGGTACCTTC
CCCTCTATGCTCGAGAATGTCGTAATCTNCAGTCTGCTTCCACTTTACCT
TTGGCCATCTTTTTGCTATAAGCTGTATATTTCCGGGCAGTGTAATGTAA
TTATGAGAGGAATATANGACCTGGAANAANGGACATGCTGTAAAGGTCTA
NTTATGCAAAAATAAATCTTTCATTCTAATGTCTGCTTCTTNNNNNNAAN
NNNNNNNNNNNNNNNNNNNNNAAAGGCGGCCCCTCTAAAAGATCCACCC
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