EY728434

Overview
NameEY728434
Unique NameEY728434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3060 contig Csv1_Contig3060:94..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_SERP5 (Glucose-1-phosphate adenylyltransferase OS=Serratia proteamaculans (strain 568) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 43/174 (24.71%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   73 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD------ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 576
            YW D+GT+EA++ ANL +     P+   YDR+ PI T    LPP+K +           +S++  GC++    + HSV+  R  ++    I+ T+L+                     + +G++  ++R IID+   I + + ++  ++ +++ R    Y  + GIV + ++ L
Sbjct:  273 YWRDVGTLEAYWRANLDLA-SVTPELDMYDRAWPIRTHMEPLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVVHSVLFPRVRVNSFCTIDSTVLL-------------------PDVNVGRSCRLRRCIIDRACHIPEGM-VIGENADEDSKR---FYRSEGGIVLVTREML 422          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_GEOTN (Glucose-1-phosphate adenylyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 45/186 (24.19%), Postives = 97/186 (52.15%), Query Frame = 1
Query:   13 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT-----QPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI----------GDNVKIVNSDSVQEAARET 525
            +VIP       R+ AY ++GYW+D+GT+++ + AN+ +  +   +   +DRS  IY+      P+Y+ P    +A+V+DS++ EGCV++   +  SV+     I +GA+++++++M                       + + ++++RAI+  ++ I           D+V +V ++ ++++  ET
Sbjct:  221 DVIPMLLREKKRLFAYPFEGYWKDVGTVKSLWEANMDLLDEN-NELDLFDRSWRIYSVNPNQPPQYISP----EAEVSDSLVNEGCVVEG-TVERSVLFQGVRIGKGAVVKESVIMPG-------------------AAVSEGAYVERAIVTPDSVIPPHSSVCPEDADDVVLVTAEWLKQSNEET 381          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_FRATO (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 41/171 (23.98%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   73 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 567
            YW D+GTI+AF+ ANL +    +P+ + YD+  P++T    LPP+K +         +T+++   GC++   +I  S++  +  +  G  I+  ++M                     + +G+N  +K+ +IDK   I   + ++  D +++A    + Y    G+V + K
Sbjct:  268 YWRDVGTIDAFWEANLDLAAN-MPELNIYDKDWPVWTAQEQLPPAKFVPDRNGNHGVITNTLASGGCIVLGSEISKSLMFSKVRVLAGCKIDQCVIM-------------------PEVVVGENCRLKKVVIDKGCDIPAGM-VIGEDPIEDA---KNFYRTDKGVVLVTK 414          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_FRATN (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 41/171 (23.98%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   73 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 567
            YW D+GTI+AF+ ANL +    +P+ + YD+  P++T    LPP+K +         +T+++   GC++   +I  S++  +  +  G  I+  ++M                     + +G+N  +K+ +IDK   I   + ++  D +++A    + Y    G+V + K
Sbjct:  268 YWRDVGTIDAFWEANLDLAAN-MPELNIYDKDWPVWTAQEQLPPAKFVPDRNGNHGVITNTLASGGCIVLGSEISKSLMFSKVRVLAGCKIDQCVIM-------------------PEVVVGENCRLKKVVIDKGCDIPAGM-VIGEDPIEDA---KNFYRTDKGVVLVTK 414          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_FRATM (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 41/171 (23.98%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   73 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 567
            YW D+GTI+AF+ ANL +    +P+ + YD+  P++T    LPP+K +         +T+++   GC++   +I  S++  +  +  G  I+  ++M                     + +G+N  +K+ +IDK   I   + ++  D +++A    + Y    G+V + K
Sbjct:  268 YWRDVGTIDAFWEANLDLAAN-MPELNIYDKDWPVWTAQEQLPPAKFVPDRNGNHGVITNTLASGGCIVLGSEISKSLMFSKVRVLAGCKIDQCVIM-------------------PEVVVGENCRLKKVVIDKGCDIPAGM-VIGEDPIEDA---KNFYRTDKGVVLVTK 414          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_FRATH (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 41/171 (23.98%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   73 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 567
            YW D+GTI+AF+ ANL +    +P+ + YD+  P++T    LPP+K +         +T+++   GC++   +I  S++  +  +  G  I+  ++M                     + +G+N  +K+ +IDK   I   + ++  D +++A    + Y    G+V + K
Sbjct:  268 YWRDVGTIDAFWEANLDLAAN-MPELNIYDKDWPVWTAQEQLPPAKFVPDRNGNHGVITNTLASGGCIVLGSEISKSLMFSKVRVLAGCKIDQCVIM-------------------PEVVVGENCRLKKVVIDKGCDIPAGM-VIGEDPIEDA---KNFYRTDKGVVLVTK 414          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_FRATF (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 41/171 (23.98%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   73 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 567
            YW D+GTI+AF+ ANL +    +P+ + YD+  P++T    LPP+K +         +T+++   GC++   +I  S++  +  +  G  I+  ++M                     + +G+N  +K+ +IDK   I   + ++  D +++A    + Y    G+V + K
Sbjct:  268 YWRDVGTIDAFWEANLDLAAN-MPELNIYDKDWPVWTAQEQLPPAKFVPDRNGNHGVITNTLASGGCIVLGSEISKSLMFSKVRVLAGCKIDQCVIM-------------------PEVVVGENCRLKKVVIDKGCDIPAGM-VIGEDPIEDA---KNFYRTDKGVVLVTK 414          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_EXIS2 (Glucose-1-phosphate adenylyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 42/158 (26.58%), Postives = 80/158 (50.63%), Query Frame = 1
Query:   16 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT-QPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 486
            +IP      + ++AY + GYW+D+GTI++ + AN+ + +   P+F  Y+ S  +++  P   P     +A +  S+I EGC I+  +I+HSV+     ++EG++++D+++                      + IGK+  I RAI+     + D   I
Sbjct:  223 IIPNMLYENLNIRAYKFKGYWKDVGTIQSLWEANMDLLEAD-PEFDLYEPSWKVHSVNPNQQPQYIGNNASIETSIINEGCHIEG-EINHSVLFYGVDVAEGSLVKDSVIF-------------------PNVKIGKDVTIHRAILADGVVVEDGATI 359          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_BURPP (Glucose-1-phosphate adenylyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 46/174 (26.44%), Postives = 78/174 (44.83%), Query Frame = 1
Query:   73 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKM------LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 576
            YW D+GTI+A++ ANL +    IP    YDR+ PI+T    LPP+K       L     + ++  GCVI   +I  SV+     +S    I + +L+                     + +G +  +++ +ID+   I +   ++  D V +A R    Y    G+V +  +AL
Sbjct:  267 YWRDVGTIDAYWAANLDLA-STIPTLDLYDRNWPIWTYQEQLPPAKFVRDMKGLQGSGNNLIVCGGCVISGSQISRSVLSSNVKVSSFCNINEAVLL-------------------PQVTVGASCRLQKVVIDRGCAIPEGT-VIGEDPVSDAER---FYRTDDGVVLVTPEAL 416          
BLAST of EY728434 vs. ExPASy Swiss-Prot
Match: GLGC_AZOSE (Glucose-1-phosphate adenylyltransferase OS=Azoarcus sp. (strain EbN1) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 49/178 (27.53%), Postives = 80/178 (44.94%), Query Frame = 1
Query:   49 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 582
            ++ Y    YW D+GTI+A+Y+AN   T    P F   +   PIY  P     +++ D  +  + +G G VI+   I  S++     + EGA + D+++M         DR            IGK + ++RAIID+   +   +KI         A     +  +SG+V + K  L P
Sbjct:  251 IRDYEEPAYWRDVGTIDAYYDANFD-TLGEFPKFCMSNPHWPIYANPDQTEAAQVHDGHIRTASLGAGVVIRRAVIERSLLRREVVVEEGAEVVDSIIM---------DRSV----------IGKGARVRRAIIDQYNFVPPGMKI----GYDPEADRQRFHISESGVVVVGKGQLKP 404          
The following BLAST results are available for this feature:
BLAST of EY728434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
GLGC_SERP57.457e-1124.71Glucose-1-phosphate adenylyltransferase OS=Serrati... [more]
GLGC_GEOTN9.739e-1124.19Glucose-1-phosphate adenylyltransferase OS=Geobaci... [more]
GLGC_FRATO9.739e-1123.98Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_FRATN9.739e-1123.98Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_FRATM9.739e-1123.98Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_FRATH9.739e-1123.98Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_FRATF9.739e-1123.98Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_EXIS29.739e-1126.58Glucose-1-phosphate adenylyltransferase OS=Exiguob... [more]
GLGC_BURPP9.739e-1126.44Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_AZOSE9.739e-1127.53Glucose-1-phosphate adenylyltransferase OS=Azoarcu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-F07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728434 ID=EY728434; Name=EY728434; organism=Citrus sinensis; type=EST; length=899bp
CACGCGTCCGGTGAAGTTATCCCTGGTGCAACTTCCATTGGGATGAGAGT
GCAAGCATATTTATATGATGGCTACTGGGAAGACATTGGAACAATTGAGG
CTTTCTACAATGCGAATCTGGGGATCACCAAAAAGCCAATTCCGGATTTC
AGCTTCTATGACCGTTCTGCTCCAATTTATACACAGCCTAGATATCTACC
TCCTTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTAATTGGTGAAG
GCTGTGTGATTAAGAATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGA
TCTTGCATATCAGAAGGTGCAATTATCGAAGATACTTTACTTATGGGAGC
AGATTATTATGAGACAGACGCGGACAGGAGGTTTTTGGCTGCAAAGGGTA
GTGTTCCAATTGGTATTGGCAAGAATTCTCACATCAAGAGAGCAATAATT
GACAAAAATGCTCGAATTGGGGATAATGTGAAGATCGTCAACAGTGACAG
TGTGCAAGAAGCAGCAAGGGAAACAGATGGATACTTCATCAAGAGCGGGA
TTGTCACAATAATCAAGGATGCCTTGATTCCCAGTGGAACCATAATCTAN
ACTGTCGTCTTCTCAGTTTCATCCCAAGCTGCGCTGCTGCGGGTACCTTC
CCCTCTATGCTCGAGAATGTCGTAATCTNCAGTCTGCTTCCACTTTACCT
TTGGCCATCTTTTTGCTATAAGCTGTATATTTCCGGGCAGTGTAATGTAA
TTATGAGAGGAATATANGACCTGGAANAANGGACATGCTGTAAAGGTCTA
NTTATGCAAAAATAAATCTTTCATTCTAATGTCTGCTTCTTNNNNNNAAN
NNNNNNNNNNNNNNNNNNNNNAAAGGCGGCCCCTCTAAAAGATCCACCC
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