EY728433 | Citrus Genome Database

Overview


Name	EY728433
Unique Name	EY728433
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	691

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_HUMAN (Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = -3

Query:    6 MPTTTRITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVP--IDVHLMVEPVDALVPMFAKAGANYISFHPEAS 293
            M +  +I PSIL++D A LG E   ++ +GAD++H DVMD H+VPN+T G  V  ++R  +      D+H+MV   +  V   A AGAN  +FH EA+
Sbjct:    1 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEAT 98

[Close]

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_CHLPN (Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = -3

Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            + PSI+ AD   LG E + +  AG+D+IH D+MD H+VPNLT GP + AAI     + ++VH M+      +  F ++GA+ I  H EAS
Sbjct:    9 VGPSIMGADLTCLGVEAKKLEQAGSDFIHIDIMDGHFVPNLTFGPGIIAAINRSTDLFLEVHAMIYNPFEFIESFVRSGADRIIVHFEAS 98

[Close]

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_RALSO (Protein apaG OS=Ralstonia solanacearum GN=apaG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 3

Query:  372 YDLSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAGWAWSAXSPCWRPAKT 596
            Y+L+V V  R++PEQS+P + Q+ FAYT+ I NTGE P+Q++SRHW+ITD  S  ++ AG       P   P ++
Sbjct:    4 YELTVQVRTRYLPEQSEPSQDQYAFAYTITIRNTGEVPSQLVSRHWVITDAESHVQEVAGLGVVGHQPLLPPGES 78

[Close]

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SHESR (Protein apaG OS=Shewanella sp. (strain MR-7) GN=apaG PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.811e-14
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 3

Query:  378 LSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            + V V   ++ +QS P +Q+++F+YT+ I N GE  A++ +RHWIITD      +  G
Sbjct:    8 IRVEVKTEYIEQQSSPEDQKYLFSYTITIVNLGEQAAKLETRHWIITDANGKITEVQG 65

HSP 2 Score: 44.669 bits (104), Expect = 3.811e-14
Identity = 21/53 (39.62%), Postives = 30/53 (56.60%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            ++ EV+G GVVG  P + P   ++ T G  L TP+G M G Y    E+G  F+
Sbjct:   59 KITEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPLGIMYGTYGMVSESGERFK 111

[Close]

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SHESA (Protein apaG OS=Shewanella sp. (strain ANA-3) GN=apaG PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.811e-14
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 3

Query:  378 LSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            + V V   ++ +QS P +Q+++F+YT+ I N GE  A++ +RHWIITD      +  G
Sbjct:    8 IRVEVKTEYIEQQSSPEDQKYLFSYTITIINLGEQAAKLETRHWIITDANGKISEVQG 65

HSP 2 Score: 45.0542 bits (105), Expect = 3.811e-14
Identity = 21/53 (39.62%), Postives = 30/53 (56.60%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            ++ EV+G GVVG  P + P   ++ T G  L TP+G M G Y    E+G  F+
Sbjct:   59 KISEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPLGIMYGTYGMVSESGEHFK 111

[Close]

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SODGM (Protein apaG OS=Sodalis glossinidius (strain morsitans) GN=apaG PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 3.811e-14
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITD 521
            V V   ++  QS P   ++VFAYT+ + N G HP Q+I R+W+IT+
Sbjct:    9 VQVQSMYIETQSQPESDRYVFAYTITLRNLGRHPVQLIGRYWLITN 54

HSP 2 Score: 47.3654 bits (111), Expect = 3.811e-14
Identity = 23/49 (46.94%), Postives = 29/49 (59.18%), Query Frame = 2

Query:  539 EVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            EV+G GVVG +P + PG  F+ T G  L TP+GTM G Y    + G  F
Sbjct:   61 EVQGEGVVGEKPRILPGGEFQYTSGAVLETPLGTMQGHYDMVDDQGQGF 109

[Close]

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_YERPY (Protein apaG OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=apaG PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.811e-14
Identity = 25/52 (48.08%), Postives = 30/52 (57.69%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GV+G QPL+ PG  F+ T G  L TP+GTM G Y      G  F
Sbjct:   58 RQTEVQGEGVIGEQPLILPGNEFQYTSGAVLETPLGTMEGHYEMIDHLGQAF 109

HSP 2 Score: 47.7506 bits (112), Expect = 3.811e-14
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 3

Query:  378 LSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITD 521
            + V V   +V  QS P E++FVFAYTV + N G    Q++ R+W+IT+
Sbjct:    7 ICVQVQSIYVETQSIPEEERFVFAYTVTVRNLGRSNVQLLGRYWLITN 54

[Close]

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_YERPS (Protein apaG OS=Yersinia pseudotuberculosis GN=apaG PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.811e-14
Identity = 25/52 (48.08%), Postives = 30/52 (57.69%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GV+G QPL+ PG  F+ T G  L TP+GTM G Y      G  F
Sbjct:   58 RQTEVQGEGVIGEQPLILPGNEFQYTSGAVLETPLGTMEGHYEMIDHLGQAF 109

HSP 2 Score: 47.7506 bits (112), Expect = 3.811e-14
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 3

Query:  378 LSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITD 521
            + V V   +V  QS P E++FVFAYTV + N G    Q++ R+W+IT+
Sbjct:    7 ICVQVQSIYVETQSIPEEERFVFAYTVTVRNLGRSNVQLLGRYWLITN 54

[Close]

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_YERPB (Protein apaG OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=apaG PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.811e-14
Identity = 25/52 (48.08%), Postives = 30/52 (57.69%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GV+G QPL+ PG  F+ T G  L TP+GTM G Y      G  F
Sbjct:   58 RQTEVQGEGVIGEQPLILPGNEFQYTSGAVLETPLGTMEGHYEMIDHLGQAF 109

HSP 2 Score: 47.7506 bits (112), Expect = 3.811e-14
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 3

Query:  378 LSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITD 521
            + V V   +V  QS P E++FVFAYTV + N G    Q++ R+W+IT+
Sbjct:    7 ICVQVQSIYVETQSIPEEERFVFAYTVTVRNLGRSNVQLLGRYWLITN 54

[Close]

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_YERP3 (Protein apaG OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=apaG PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.811e-14
Identity = 25/52 (48.08%), Postives = 30/52 (57.69%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GV+G QPL+ PG  F+ T G  L TP+GTM G Y      G  F
Sbjct:   58 RQTEVQGEGVIGEQPLILPGNEFQYTSGAVLETPLGTMEGHYEMIDHLGQAF 109

HSP 2 Score: 47.7506 bits (112), Expect = 3.811e-14
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 3

Query:  378 LSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITD 521
            + V V   +V  QS P E++FVFAYTV + N G    Q++ R+W+IT+
Sbjct:    7 ICVQVQSIYVETQSIPEEERFVFAYTVTVRNLGRSNVQLLGRYWLITN 54

The following BLAST results are available for this feature:

BLAST of EY728433 vs. ExPASy Swiss-Prot

BLAST of EY728433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151


Match Name	E-value	Identity	Description
RPE_HUMAN	3.542e-14	41.84	Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=...	[more]
RPE_CHLPN	3.542e-14	42.22	Ribulose-phosphate 3-epimerase OS=Chlamydia pneumo...	[more]
APAG_RALSO	3.542e-14	45.33	Protein apaG OS=Ralstonia solanacearum GN=apaG PE=...	[more]
APAG_SHESR	3.811e-14	37.93	Protein apaG OS=Shewanella sp. (strain MR-7) GN=ap...	[more]
APAG_SHESA	3.811e-14	37.93	Protein apaG OS=Shewanella sp. (strain ANA-3) GN=a...	[more]
APAG_SODGM	3.811e-14	43.48	Protein apaG OS=Sodalis glossinidius (strain morsi...	[more]
APAG_YERPY	3.811e-14	48.08	Protein apaG OS=Yersinia pseudotuberculosis seroty...	[more]
APAG_YERPS	3.811e-14	48.08	Protein apaG OS=Yersinia pseudotuberculosis GN=apa...	[more]
APAG_YERPB	3.811e-14	48.08	Protein apaG OS=Yersinia pseudotuberculosis seroty...	[more]
APAG_YERP3	3.811e-14	48.08	Protein apaG OS=Yersinia pseudotuberculosis seroty...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-003-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728433 ID=EY728433; Name=EY728433; organism=Citrus sinensis; type=EST; length=691bp
TGGCGGCTGGCTTCCGGGTGGAAGCTGATGTAGTTGGCGCCGGCCTTGGC
GAACATCGGCACCAGGGCGTCCACCGGCTCGACCATGAGGTGCACGTCGA
TCGGCACGGAAACATGGGGACGGATCGCCGCGCAGACCATCGGGCCGATG
GTCAGGTTGGGCACGTAGTGGTTGTCCATCACATCGAAATGGATCCAGTC
GGCGCCGGCGGCGACGACGTCACGCACTTCCTCGCCCAGGCGGGCGAAGT
CGGCGGACAGGATGCTGGGGGTGATGCGGGTGGTGGTAGGCATGGCGTTC
GGGGTGGGTGAAGGCATAATGTGCCATTATTGCAGCTTGCTCGTGCCACA
CAGGAAAGGACTGTGAAACCCTACGACCTGAGCGTCTCCGTCTCGCCGCG
CTTCGTGCCAGAACAGTCCGATCCGGGTGAGCAGCAGTTCGTGTTCGCCT
ATACCGTCCGCATCACCAATACCGGCGAGCATCCGGCCCAGGTGATCAGC
CGCCACTGGATTATCACCGATGGCACCAGCGCGTGCAGGAAGTGCGCGGG
CTGGGCGTGGTCGGCCANCAGCCCCTGCTGGCGCCCGGCGAAAACTTCGA
ACTAACCANCGGCTGTCCCCTCCCCACCCCGGTCGGGACGATGGGCGGCG
CCTACCATTGCTTCNGCGAAAACGGGATCCCGTTCGAANTG