EY728433

Overview
NameEY728433
Unique NameEY728433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_PSEAE (Protein apaG OS=Pseudomonas aeruginosa GN=apaG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.917e-22
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  372 YDLSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            + ++V V  R++PEQS P + +F FAYTV I N GE PAQ++SRHWIITDG    ++  G
Sbjct:    6 HQVNVRVDTRYLPEQSAPEQNRFAFAYTVTIENQGEVPAQLLSRHWIITDGDGRTQEVRG 65          

HSP 2 Score: 56.9954 bits (136), Expect = 3.917e-22
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 2
Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            R QEVRG GVVG QPL+APG     T G  L T VG+M G+Y     +GI F+
Sbjct:   59 RTQEVRGAGVVGEQPLIAPGAQHTYTSGTVLATRVGSMRGSYQMLGSDGIAFD 111          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_PSEAB (Protein apaG OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=apaG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.917e-22
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  372 YDLSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            + ++V V  R++PEQS P + +F FAYTV I N GE PAQ++SRHWIITDG    ++  G
Sbjct:    6 HQVNVRVDTRYLPEQSAPEQNRFAFAYTVTIENQGEVPAQLLSRHWIITDGDGRTQEVRG 65          

HSP 2 Score: 56.9954 bits (136), Expect = 3.917e-22
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 2
Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            R QEVRG GVVG QPL+APG     T G  L T VG+M G+Y     +GI F+
Sbjct:   59 RTQEVRGAGVVGEQPLIAPGAQHTYTSGTVLATRVGSMRGSYQMLGSDGIAFD 111          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_PSEA8 (Protein apaG OS=Pseudomonas aeruginosa (strain LESB58) GN=apaG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.917e-22
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  372 YDLSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            + ++V V  R++PEQS P + +F FAYTV I N GE PAQ++SRHWIITDG    ++  G
Sbjct:    6 HQVNVRVDTRYLPEQSAPEQNRFAFAYTVTIENQGEVPAQLLSRHWIITDGDGRTQEVRG 65          

HSP 2 Score: 56.9954 bits (136), Expect = 3.917e-22
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 2
Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            R QEVRG GVVG QPL+APG     T G  L T VG+M G+Y     +GI F+
Sbjct:   59 RTQEVRGAGVVGEQPLIAPGAQHTYTSGTVLATRVGSMRGSYQMLGSDGIAFD 111          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_BUCBP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpe PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIR---PHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            ++ S+LSA+F+RLGE++ DV+ +G+D IH+DVMDNHYV NLT GP+V  ++R      S+ IDVHLM  PVD L+  FAK   N ISFHPE++
Sbjct:    6 LSSSVLSANFSRLGEDIFDVLKSGSDMIHYDVMDNHYVKNLTFGPIVLESLRSVEKIKSMVIDVHLMTCPVDDLIIKFAKLDVNIISFHPEST 98          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_PSEA7 (Protein apaG OS=Pseudomonas aeruginosa (strain PA7) GN=apaG PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.188e-21
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  372 YDLSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            + ++V V  R++PEQS P + +F FAYTV I N GE  AQ++SRHWIITDG    ++  G
Sbjct:    6 HQVNVRVDTRYLPEQSAPEQNRFAFAYTVTIENRGEVSAQLLSRHWIITDGDGRTQEVRG 65          

HSP 2 Score: 56.6102 bits (135), Expect = 4.188e-21
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 2
Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            R QEVRG GVVG QPL+APG     T G  L T VG+M G+Y     +G+ F+
Sbjct:   59 RTQEVRGAGVVGEQPLIAPGAQHTYTSGTVLATRVGSMRGSYQMLGSDGVAFD 111          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_STRCO (Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor GN=rpe PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = -3
Query:    6 RITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 278
            +I PSILSADFARL +E + V   GADW+H DVMDNH+VPNLT+G  V  ++      P+D HLM+E  D   P + +AGA  ++FH EA+
Sbjct:    4 QINPSILSADFARLADEAKAV--EGADWLHVDVMDNHFVPNLTLGVPVVESLARATDTPLDCHLMIEAPDRWAPQYVEAGAGSVTFHAEAA 92          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_PSEMY (Protein apaG OS=Pseudomonas mendocina (strain ymp) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.819e-19
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  372 YDLSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            Y + VSV+ R++  QS P + ++ F+YTV I N G+ PA+++SRHWIITDG    ++  G
Sbjct:    6 YQIDVSVTTRYLAAQSQPEQNRYAFSYTVTIVNNGQLPAKLLSRHWIITDGDGRVQEVRG 65          

HSP 2 Score: 51.9878 bits (123), Expect = 2.819e-19
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 2
Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            RVQEVRG GVVG QP +APG +   + G  + T VG M G+Y    E+G  F+
Sbjct:   59 RVQEVRGAGVVGQQPDIAPGASHTYSSGTVMATQVGIMQGSYQMLAEDGKRFD 111          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_AQUAE (Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus GN=rpe PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = -3
Query:   12 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPE 275
            + PSIL+ D+  +GE+++  +  GAD +H+DVMD H+VPN+T G  + + IR   S+PID HLM+E  D  +P F +AGAN+IS H E
Sbjct:    4 LAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPIDAHLMIENPDKYIPKFVEAGANWISVHIE 91          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE1_ORYSJ (Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = -3
Query:    3 AMPTTTRITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEASR 296
            A     +I PS+LS+DFA L  E   +V  GADW+H D+MD H+VPNLTIG  V  ++R H    +D HLMV      V   AKAGA+  +FH E SR
Sbjct:    2 AAAAAAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSR 99          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SHISS (Protein apaG OS=Shigella sonnei (strain Ss046) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109          

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3
Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55          
The following BLAST results are available for this feature:
BLAST of EY728433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
APAG_PSEAE3.917e-2251.67Protein apaG OS=Pseudomonas aeruginosa GN=apaG PE=... [more]
APAG_PSEAB3.917e-2251.67Protein apaG OS=Pseudomonas aeruginosa (strain UCB... [more]
APAG_PSEA83.917e-2251.67Protein apaG OS=Pseudomonas aeruginosa (strain LES... [more]
RPE_BUCBP1.754e-2154.84Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
APAG_PSEA74.188e-2150.00Protein apaG OS=Pseudomonas aeruginosa (strain PA7... [more]
RPE_STRCO1.485e-2051.65Ribulose-phosphate 3-epimerase OS=Streptomyces coe... [more]
APAG_PSEMY2.819e-1945.00Protein apaG OS=Pseudomonas mendocina (strain ymp)... [more]
RPE_AQUAE3.657e-1947.73Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus... [more]
RPE1_ORYSJ3.657e-1947.96Ribulose-phosphate 3-epimerase, cytoplasmic isofor... [more]
APAG_SHISS8.069e-1955.77Protein apaG OS=Shigella sonnei (strain Ss046) GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728433 ID=EY728433; Name=EY728433; organism=Citrus sinensis; type=EST; length=691bp
TGGCGGCTGGCTTCCGGGTGGAAGCTGATGTAGTTGGCGCCGGCCTTGGC
GAACATCGGCACCAGGGCGTCCACCGGCTCGACCATGAGGTGCACGTCGA
TCGGCACGGAAACATGGGGACGGATCGCCGCGCAGACCATCGGGCCGATG
GTCAGGTTGGGCACGTAGTGGTTGTCCATCACATCGAAATGGATCCAGTC
GGCGCCGGCGGCGACGACGTCACGCACTTCCTCGCCCAGGCGGGCGAAGT
CGGCGGACAGGATGCTGGGGGTGATGCGGGTGGTGGTAGGCATGGCGTTC
GGGGTGGGTGAAGGCATAATGTGCCATTATTGCAGCTTGCTCGTGCCACA
CAGGAAAGGACTGTGAAACCCTACGACCTGAGCGTCTCCGTCTCGCCGCG
CTTCGTGCCAGAACAGTCCGATCCGGGTGAGCAGCAGTTCGTGTTCGCCT
ATACCGTCCGCATCACCAATACCGGCGAGCATCCGGCCCAGGTGATCAGC
CGCCACTGGATTATCACCGATGGCACCAGCGCGTGCAGGAAGTGCGCGGG
CTGGGCGTGGTCGGCCANCAGCCCCTGCTGGCGCCCGGCGAAAACTTCGA
ACTAACCANCGGCTGTCCCCTCCCCACCCCGGTCGGGACGATGGGCGGCG
CCTACCATTGCTTCNGCGAAAACGGGATCCCGTTCGAANTG
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