EY728433 | Citrus Genome Database

Overview


Name	EY728433
Unique Name	EY728433
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	691

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SHIFL (Protein apaG OS=Shigella flexneri GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SHIF8 (Protein apaG OS=Shigella flexneri serotype 5b (strain 8401) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SHIDS (Protein apaG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SHIBS (Protein apaG OS=Shigella boydii serotype 4 (strain Sb227) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SHIB3 (Protein apaG OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_ESCF3 (Protein apaG OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_ECOUT (Protein apaG OS=Escherichia coli (strain UTI89 / UPEC) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_ECOSM (Protein apaG OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_ECOSE (Protein apaG OS=Escherichia coli (strain SE11) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_ECOLU (Protein apaG OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.069e-19
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2

Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            R  EV+G GVVG QPL+APGE ++ T G  + TP+GTM G Y    ENG+PF
Sbjct:   58 RETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPF 109

HSP 2 Score: 50.8322 bits (120), Expect = 8.069e-19
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P  +++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

The following BLAST results are available for this feature:

BLAST of EY728433 vs. ExPASy Swiss-Prot

BLAST of EY728433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151


Match Name	E-value	Identity	Description
APAG_SHIFL	8.069e-19	55.77	Protein apaG OS=Shigella flexneri GN=apaG PE=3 SV=...	[more]
APAG_SHIF8	8.069e-19	55.77	Protein apaG OS=Shigella flexneri serotype 5b (str...	[more]
APAG_SHIDS	8.069e-19	55.77	Protein apaG OS=Shigella dysenteriae serotype 1 (s...	[more]
APAG_SHIBS	8.069e-19	55.77	Protein apaG OS=Shigella boydii serotype 4 (strain...	[more]
APAG_SHIB3	8.069e-19	55.77	Protein apaG OS=Shigella boydii serotype 18 (strai...	[more]
APAG_ESCF3	8.069e-19	55.77	Protein apaG OS=Escherichia fergusonii (strain ATC...	[more]
APAG_ECOUT	8.069e-19	55.77	Protein apaG OS=Escherichia coli (strain UTI89 / U...	[more]
APAG_ECOSM	8.069e-19	55.77	Protein apaG OS=Escherichia coli (strain SMS-3-5 /...	[more]
APAG_ECOSE	8.069e-19	55.77	Protein apaG OS=Escherichia coli (strain SE11) GN=...	[more]
APAG_ECOLU	8.069e-19	55.77	Protein apaG OS=Escherichia coli O17:K52:H18 (stra...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-704-003-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728433 ID=EY728433; Name=EY728433; organism=Citrus sinensis; type=EST; length=691bp
TGGCGGCTGGCTTCCGGGTGGAAGCTGATGTAGTTGGCGCCGGCCTTGGC
GAACATCGGCACCAGGGCGTCCACCGGCTCGACCATGAGGTGCACGTCGA
TCGGCACGGAAACATGGGGACGGATCGCCGCGCAGACCATCGGGCCGATG
GTCAGGTTGGGCACGTAGTGGTTGTCCATCACATCGAAATGGATCCAGTC
GGCGCCGGCGGCGACGACGTCACGCACTTCCTCGCCCAGGCGGGCGAAGT
CGGCGGACAGGATGCTGGGGGTGATGCGGGTGGTGGTAGGCATGGCGTTC
GGGGTGGGTGAAGGCATAATGTGCCATTATTGCAGCTTGCTCGTGCCACA
CAGGAAAGGACTGTGAAACCCTACGACCTGAGCGTCTCCGTCTCGCCGCG
CTTCGTGCCAGAACAGTCCGATCCGGGTGAGCAGCAGTTCGTGTTCGCCT
ATACCGTCCGCATCACCAATACCGGCGAGCATCCGGCCCAGGTGATCAGC
CGCCACTGGATTATCACCGATGGCACCAGCGCGTGCAGGAAGTGCGCGGG
CTGGGCGTGGTCGGCCANCAGCCCCTGCTGGCGCCCGGCGAAAACTTCGA
ACTAACCANCGGCTGTCCCCTCCCCACCCCGGTCGGGACGATGGGCGGCG
CCTACCATTGCTTCNGCGAAAACGGGATCCCGTTCGAANTG