EY728433 | Citrus Genome Database

Overview


Name	EY728433
Unique Name	EY728433
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	691

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALPK (Protein apaG OS=Salmonella paratyphi A (strain AKU_12601) GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2

Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALPB (Protein apaG OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2

Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALPA (Protein apaG OS=Salmonella paratyphi A GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2

Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALNS (Protein apaG OS=Salmonella newport (strain SL254) GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2

Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALHS (Protein apaG OS=Salmonella heidelberg (strain SL476) GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2

Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALG2 (Protein apaG OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2

Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALEP (Protein apaG OS=Salmonella enteritidis PT4 (strain P125109) GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2

Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALDC (Protein apaG OS=Salmonella dublin (strain CT_02021853) GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2

Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALCH (Protein apaG OS=Salmonella choleraesuis GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2

Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALAR (Protein apaG OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2

Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3

Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55

The following BLAST results are available for this feature:

BLAST of EY728433 vs. ExPASy Swiss-Prot

BLAST of EY728433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151


Match Name	E-value	Identity	Description
APAG_SALPK	1.453e-17	51.85	Protein apaG OS=Salmonella paratyphi A (strain AKU...	[more]
APAG_SALPB	1.453e-17	51.85	Protein apaG OS=Salmonella paratyphi B (strain ATC...	[more]
APAG_SALPA	1.453e-17	51.85	Protein apaG OS=Salmonella paratyphi A GN=apaG PE=...	[more]
APAG_SALNS	1.453e-17	51.85	Protein apaG OS=Salmonella newport (strain SL254) ...	[more]
APAG_SALHS	1.453e-17	51.85	Protein apaG OS=Salmonella heidelberg (strain SL47...	[more]
APAG_SALG2	1.453e-17	51.85	Protein apaG OS=Salmonella gallinarum (strain 287/...	[more]
APAG_SALEP	1.453e-17	51.85	Protein apaG OS=Salmonella enteritidis PT4 (strain...	[more]
APAG_SALDC	1.453e-17	51.85	Protein apaG OS=Salmonella dublin (strain CT_02021...	[more]
APAG_SALCH	1.453e-17	51.85	Protein apaG OS=Salmonella choleraesuis GN=apaG PE...	[more]
APAG_SALAR	1.453e-17	51.85	Protein apaG OS=Salmonella arizonae (strain ATCC B...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-003-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728433 ID=EY728433; Name=EY728433; organism=Citrus sinensis; type=EST; length=691bp
TGGCGGCTGGCTTCCGGGTGGAAGCTGATGTAGTTGGCGCCGGCCTTGGC
GAACATCGGCACCAGGGCGTCCACCGGCTCGACCATGAGGTGCACGTCGA
TCGGCACGGAAACATGGGGACGGATCGCCGCGCAGACCATCGGGCCGATG
GTCAGGTTGGGCACGTAGTGGTTGTCCATCACATCGAAATGGATCCAGTC
GGCGCCGGCGGCGACGACGTCACGCACTTCCTCGCCCAGGCGGGCGAAGT
CGGCGGACAGGATGCTGGGGGTGATGCGGGTGGTGGTAGGCATGGCGTTC
GGGGTGGGTGAAGGCATAATGTGCCATTATTGCAGCTTGCTCGTGCCACA
CAGGAAAGGACTGTGAAACCCTACGACCTGAGCGTCTCCGTCTCGCCGCG
CTTCGTGCCAGAACAGTCCGATCCGGGTGAGCAGCAGTTCGTGTTCGCCT
ATACCGTCCGCATCACCAATACCGGCGAGCATCCGGCCCAGGTGATCAGC
CGCCACTGGATTATCACCGATGGCACCAGCGCGTGCAGGAAGTGCGCGGG
CTGGGCGTGGTCGGCCANCAGCCCCTGCTGGCGCCCGGCGAAAACTTCGA
ACTAACCANCGGCTGTCCCCTCCCCACCCCGGTCGGGACGATGGGCGGCG
CCTACCATTGCTTCNGCGAAAACGGGATCCCGTTCGAANTG