EY728433

Overview
NameEY728433
Unique NameEY728433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SALA4 (Protein apaG OS=Salmonella agona (strain SL483) GN=apaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.453e-17
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 2
Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    ENG  F
Sbjct:   56 HGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAF 109          

HSP 2 Score: 51.6026 bits (122), Expect = 1.453e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3
Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_CITK8 (Protein apaG OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=apaG PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.890e-17
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 2
Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +APGE ++ T G  + TP+GTM G Y    E G+ F
Sbjct:   56 HGRETEVQGEGVVGVQPHIAPGEEYQYTSGAVIETPLGTMQGHYEMIDEKGVAF 109          

HSP 2 Score: 51.6026 bits (122), Expect = 1.890e-17
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3
Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            + V   ++  QS P ++++VFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 IQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNG 55          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_ANAD2 (Protein apaG OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=apaG PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.457e-17
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 3
Query:  378 LSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            + V+V   F PE+S+PG  +F+F+YTVRI N GE PAQ++SR WII D +    +  G
Sbjct:    9 IEVTVRSTFRPERSEPG--RFLFSYTVRIANQGEVPAQLVSRRWIILDASGEREEVVG 64          

HSP 2 Score: 51.9878 bits (123), Expect = 2.457e-17
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2
Query:  536 QEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            +EV G GVVG QP L PGE+FE T  C L TP G+M G Y    ++G  F+
Sbjct:   60 EEVVGDGVVGQQPHLEPGEHFEYTSFCVLKTPHGSMRGTYRMVRDDGQAFD 110          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_YEAST (Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae GN=RPE1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = -3
Query:    3 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVP-------------IDVHLMVEPVDALVPMFAKAGANYISFHPEASR 275
            I PSIL++DFA LG E   V+ AGADW+H DVMD H+VPN+T+G  +  ++R  V  P              D H+MVE  +  V  FAK GA+  +FH EA++
Sbjct:    6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQ 109          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_TREPA (Ribulose-phosphate 3-epimerase OS=Treponema pallidum GN=rpe PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = -3
Query:    9 MPTTTRITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEA 293
            M  +  + PS+LSADF+ L   +  + A GA W+H DVMD H+VPNLT G  V   +R    +P DVHLMV     L+  F +AGA++++FH EA
Sbjct:    1 MERSFTLAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLPFDVHLMVSRPADLIEDFVQAGADFLTFHIEA 95          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_ANASK (Protein apaG OS=Anaeromyxobacter sp. (strain K) GN=apaG PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.155e-17
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 3
Query:  378 LSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            + V+V   F PE+S+PG  +F+F+YTVRI N GE PAQ++SR WII D      +  G
Sbjct:    9 IEVTVRSTFRPERSEPG--RFLFSYTVRIANQGEVPAQLVSRRWIILDANGEREEVVG 64          

HSP 2 Score: 51.6026 bits (122), Expect = 4.155e-17
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 2
Query:  536 QEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            +EV G GVVG QP L PGE+FE T  C L TP G+M G Y    + G  F+
Sbjct:   60 EEVVGDGVVGQQPHLEPGEHFEYTSFCVLKTPHGSMRGTYRMVRDGGQAFD 110          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_HELPJ (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori J99 GN=rpe PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = -3
Query:   12 RITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPE 278
            ++ PS+LSADF  L +E+  V  + AD++H DVMD HYVPNLT+GP++   +     VP+DVHLMVE     V +FA      IS H E
Sbjct:    2 KVAPSLLSADFMHLAKEIESV--SNADFLHVDVMDGHYVPNLTMGPVILENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAE 88          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_PSEFS (Protein apaG OS=Pseudomonas fluorescens (strain SBW25) GN=apaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.544e-16
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 3
Query:  372 YDLSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            Y + VSV  RF+ +QS P + +F FAYT+ + N G  PA+++SRHW+ITDG     +  G
Sbjct:    6 YQIDVSVVTRFLADQSQPEQNRFAFAYTITVKNNGLVPAKLLSRHWVITDGDGQVEEVRG 65          

HSP 2 Score: 43.1282 bits (100), Expect = 1.544e-16
Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 2
Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            +V+EVRG GVVG QPL+  G +   + G  + + VGTM G+Y     +G  F+
Sbjct:   59 QVEEVRGAGVVGQQPLIDIGASHTYSSGTVMTSKVGTMQGSYQMKATDGKLFD 111          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_HELPY (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori GN=rpe PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = -3
Query:   12 RITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPE 278
            ++ PS+LSADF  L +E+  V  + AD++H DVMD HYVPNLT+GP+V   +     VP+DVHLMVE       +FA      IS H E
Sbjct:    2 KVAPSLLSADFMHLAKEIESV--SNADFLHVDVMDGHYVPNLTMGPVVLENVTQMSQVPLDVHLMVENASFFAELFAPLKPQIISIHAE 88          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_CHLTR (Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis GN=rpe PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            + PSI+ AD A +G E R++  +GAD IH DVMD H+VPN+T GP V AAI     + ++VH M+      V  F KAGA+ I  H EA+
Sbjct:   13 VAPSIMGADLACIGREARNIEESGADLIHIDVMDGHFVPNITFGPGVVAAINRSTELFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAA 102          
The following BLAST results are available for this feature:
BLAST of EY728433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
APAG_SALA41.453e-1751.85Protein apaG OS=Salmonella agona (strain SL483) GN... [more]
APAG_CITK81.890e-1750.00Protein apaG OS=Citrobacter koseri (strain ATCC BA... [more]
APAG_ANAD22.457e-1748.28Protein apaG OS=Anaeromyxobacter dehalogenans (str... [more]
RPE_YEAST2.620e-1744.23Ribulose-phosphate 3-epimerase OS=Saccharomyces ce... [more]
RPE_TREPA2.620e-1745.26Ribulose-phosphate 3-epimerase OS=Treponema pallid... [more]
APAG_ANASK4.155e-1748.28Protein apaG OS=Anaeromyxobacter sp. (strain K) GN... [more]
RPE_HELPJ7.624e-1747.19Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
APAG_PSEFS1.544e-1645.00Protein apaG OS=Pseudomonas fluorescens (strain SB... [more]
RPE_HELPY2.897e-1647.19Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
RPE_CHLTR6.454e-1646.67Ribulose-phosphate 3-epimerase OS=Chlamydia tracho... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728433 ID=EY728433; Name=EY728433; organism=Citrus sinensis; type=EST; length=691bp
TGGCGGCTGGCTTCCGGGTGGAAGCTGATGTAGTTGGCGCCGGCCTTGGC
GAACATCGGCACCAGGGCGTCCACCGGCTCGACCATGAGGTGCACGTCGA
TCGGCACGGAAACATGGGGACGGATCGCCGCGCAGACCATCGGGCCGATG
GTCAGGTTGGGCACGTAGTGGTTGTCCATCACATCGAAATGGATCCAGTC
GGCGCCGGCGGCGACGACGTCACGCACTTCCTCGCCCAGGCGGGCGAAGT
CGGCGGACAGGATGCTGGGGGTGATGCGGGTGGTGGTAGGCATGGCGTTC
GGGGTGGGTGAAGGCATAATGTGCCATTATTGCAGCTTGCTCGTGCCACA
CAGGAAAGGACTGTGAAACCCTACGACCTGAGCGTCTCCGTCTCGCCGCG
CTTCGTGCCAGAACAGTCCGATCCGGGTGAGCAGCAGTTCGTGTTCGCCT
ATACCGTCCGCATCACCAATACCGGCGAGCATCCGGCCCAGGTGATCAGC
CGCCACTGGATTATCACCGATGGCACCAGCGCGTGCAGGAAGTGCGCGGG
CTGGGCGTGGTCGGCCANCAGCCCCTGCTGGCGCCCGGCGAAAACTTCGA
ACTAACCANCGGCTGTCCCCTCCCCACCCCGGTCGGGACGATGGGCGGCG
CCTACCATTGCTTCNGCGAAAACGGGATCCCGTTCGAANTG
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