EY728433

Overview
NameEY728433
Unique NameEY728433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_CANGA (Ribulose-phosphate 3-epimerase OS=Candida glabrata GN=RPE1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = -3
Query:    3 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHV----------------SVPIDVHLMVEPVDALVPMFAKAGANYISFHPEASR 275
            I PSIL++DFA LG E   V+ +GA+W+H DVMD H+VPN+T+G  +  ++R  V                +   D H+MVE  +  V  FAKAGA+  +FH EA++
Sbjct:    6 IAPSILASDFANLGCECHRVINSGAEWLHIDVMDGHFVPNITLGQPIVTSLRRAVPRSQEEEKASGEVARPTAFFDCHMMVEEPEKWVADFAKAGADQFTFHYEATK 112          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_CHRSD (Protein apaG OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=apaG PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 7.460e-16
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 2
Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHC 661
            +VQEVRG GV+G QPL+ PG+ F  T    L  PVG M G+Y C
Sbjct:   59 KVQEVRGKGVIGQQPLIGPGQQFRYTSRAVLDGPVGVMEGSYTC 102          

HSP 2 Score: 51.6026 bits (122), Expect = 7.460e-16
Identity = 20/58 (34.48%), Postives = 35/58 (60.34%), Query Frame = 3
Query:  378 LSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            + V V P +   +S PG+Q++VF+YT+ + N   H  Q+++RHW IT  +   ++  G
Sbjct:    8 IQVHVEPEYQAGESAPGDQRYVFSYTITVHNRSAHSIQLLARHWKITQSSGKVQEVRG 65          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_ENT38 (Protein apaG OS=Enterobacter sp. (strain 638) GN=apaG PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 7.460e-16
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 3
Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            V V   ++  QS P +++FVFAYTV I N G  P Q++ R+W+IT+G
Sbjct:    9 VQVQSVYIESQSTPDDERFVFAYTVTIRNLGRMPVQLLGRYWLITNG 55          

HSP 2 Score: 51.9878 bits (123), Expect = 7.460e-16
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 2
Query:  539 EVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            EV+G GVVG QP +APGE F+ T G  + TP+GTM G Y     +G  F
Sbjct:   61 EVQGEGVVGEQPHIAPGEEFQYTSGAVIETPMGTMQGHYEMVDVDGNAF 109          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_SCHPO (Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe GN=SPAC31G5.05c PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 43/94 (45.74%), Postives = 59/94 (62.77%), Query Frame = -3
Query:    6 RITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVP---IDVHLMVEPVDALVPMFAKAGANYISFHPEAS 278
            +I PS+L+ DFA L +EV  ++  G+DW+H DVMD  +VPNLTIGP+V  A+R H +      D HLMV   +  +   A AGA+   FH EA+
Sbjct:    5 KIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYTKEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYEAT 98          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_CHLMU (Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum GN=rpe PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            I PSI+ AD A LG+  R++  +GA+ IH DVMD H+VPN+T GP + AAI     + ++VH M+      V  F KAGA+ I  H EA+
Sbjct:    8 IAPSIMGADLACLGDAARNIEESGANLIHIDVMDGHFVPNITFGPGIIAAINRSTDLFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAA 97          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_METJA (Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii GN=rpe PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = -3
Query:    9 RITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEA 278
            +I  SILSADF  L EE++    AG D+ H D+MD H+VPN+++G  +   ++    +P++VHLMVE VD  V  F +   +YI+FH EA
Sbjct:    3 KIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE--MDYITFHIEA 90          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SERP5 (Protein apaG OS=Serratia proteamaculans (strain 568) GN=apaG PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 7.907e-15
Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 2
Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            R  EV+G GVVG QPL+ PG  F+ T G  L TP+GTM G Y      G PF+
Sbjct:   58 RQTEVQGEGVVGEQPLIPPGGEFQYTSGAILETPLGTMEGHYEMVDHQGQPFQ 110          

HSP 2 Score: 46.2098 bits (108), Expect = 7.907e-15
Identity = 19/46 (41.30%), Postives = 30/46 (65.22%), Query Frame = 3
Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITD 521
            + V   +V  QS P E+++VFAYT+ I N G    Q++ R+W+IT+
Sbjct:    9 IQVQSVYVESQSIPEEERYVFAYTITIRNLGRFNVQLLGRYWLITN 54          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_KLEP3 (Protein apaG OS=Klebsiella pneumoniae (strain 342) GN=apaG PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.736e-14
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 3
Query:  384 VSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDG 524
            V V   ++  QS P E+++VFAYTV I N G    Q++ R+W+IT+G
Sbjct:    9 VQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNG 55          

HSP 2 Score: 50.0618 bits (118), Expect = 1.736e-14
Identity = 24/54 (44.44%), Postives = 31/54 (57.41%), Query Frame = 2
Query:  524 HQRVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPF 685
            H R  EV+G GVVG QP +  G  ++ T G  + TP+GTM G Y     +G PF
Sbjct:   56 HGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPF 109          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: APAG_SHESM (Protein apaG OS=Shewanella sp. (strain MR-4) GN=apaG PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.932e-14
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 3
Query:  378 LSVSVSPRFVPEQSDPGEQQFVFAYTVRITNTGEHPAQVISRHWIITDGTSACRKCAG 551
            + V V   ++ +QS P +Q+++F+YT+ I N GE  A++ +RHWIITD      +  G
Sbjct:    8 IRVEVKTEYIEQQSSPEDQKYLFSYTITIVNLGEQAAKLETRHWIITDANGKISEVQG 65          

HSP 2 Score: 45.0542 bits (105), Expect = 2.932e-14
Identity = 21/53 (39.62%), Postives = 30/53 (56.60%), Query Frame = 2
Query:  530 RVQEVRGLGVVGXQPLLAPGENFELTXGCPLPTPVGTMGGAYHCFXENGIPFE 688
            ++ EV+G GVVG  P + P   ++ T G  L TP+G M G Y    E+G  F+
Sbjct:   59 KISEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPLGIMYGTYGMVSESGERFK 111          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_PONAB (Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = -3
Query:    6 MPTTTRITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVP--IDVHLMVEPVDALVPMFAKAGANYISFHPEAS 293
            M +  +I PSIL++D A LG E   ++ +GAD++H DVMD H+VPN+T G  V  ++R  +      D+H+MV   +  V   A AGAN  +FH EA+
Sbjct:    1 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYAFHLEAT 98          
The following BLAST results are available for this feature:
BLAST of EY728433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
RPE_CANGA6.454e-1641.12Ribulose-phosphate 3-epimerase OS=Candida glabrata... [more]
APAG_CHRSD7.460e-1654.55Protein apaG OS=Chromohalobacter salexigens (strai... [more]
APAG_ENT387.460e-1646.81Protein apaG OS=Enterobacter sp. (strain 638) GN=a... [more]
RPE_SCHPO8.430e-1645.74Ribulose-phosphate 3-epimerase OS=Schizosaccharomy... [more]
RPE_CHLMU4.184e-1545.56Ribulose-phosphate 3-epimerase OS=Chlamydia murida... [more]
RPE_METJA7.136e-1544.44Ribulose-phosphate 3-epimerase OS=Methanocaldococc... [more]
APAG_SERP57.907e-1550.94Protein apaG OS=Serratia proteamaculans (strain 56... [more]
APAG_KLEP31.736e-1444.68Protein apaG OS=Klebsiella pneumoniae (strain 342)... [more]
APAG_SHESM2.932e-1437.93Protein apaG OS=Shewanella sp. (strain MR-4) GN=ap... [more]
RPE_PONAB3.542e-1441.84Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728433 ID=EY728433; Name=EY728433; organism=Citrus sinensis; type=EST; length=691bp
TGGCGGCTGGCTTCCGGGTGGAAGCTGATGTAGTTGGCGCCGGCCTTGGC
GAACATCGGCACCAGGGCGTCCACCGGCTCGACCATGAGGTGCACGTCGA
TCGGCACGGAAACATGGGGACGGATCGCCGCGCAGACCATCGGGCCGATG
GTCAGGTTGGGCACGTAGTGGTTGTCCATCACATCGAAATGGATCCAGTC
GGCGCCGGCGGCGACGACGTCACGCACTTCCTCGCCCAGGCGGGCGAAGT
CGGCGGACAGGATGCTGGGGGTGATGCGGGTGGTGGTAGGCATGGCGTTC
GGGGTGGGTGAAGGCATAATGTGCCATTATTGCAGCTTGCTCGTGCCACA
CAGGAAAGGACTGTGAAACCCTACGACCTGAGCGTCTCCGTCTCGCCGCG
CTTCGTGCCAGAACAGTCCGATCCGGGTGAGCAGCAGTTCGTGTTCGCCT
ATACCGTCCGCATCACCAATACCGGCGAGCATCCGGCCCAGGTGATCAGC
CGCCACTGGATTATCACCGATGGCACCAGCGCGTGCAGGAAGTGCGCGGG
CTGGGCGTGGTCGGCCANCAGCCCCTGCTGGCGCCCGGCGAAAACTTCGA
ACTAACCANCGGCTGTCCCCTCCCCACCCCGGTCGGGACGATGGGCGGCG
CCTACCATTGCTTCNGCGAAAACGGGATCCCGTTCGAANTG
back to top