EY728426

Overview
NameEY728426
Unique NameEY728426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:400..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.449e-49
Identity = 90/137 (65.69%), Postives = 112/137 (81.75%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKVR VQ G KG+P++ T+DGRT+RYPDP+IK NDTI+L++  NKI D IKFD GN+ M+TGGRN GRVG + +RE+H GSF+  HI+D+ GH FATR+ NVF IGKGSK +VSLP+GKG+KLSI EE  KR
Sbjct:  119 AKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.449e-49
Identity = 86/137 (62.77%), Postives = 110/137 (80.29%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.884e-49
Identity = 85/137 (62.04%), Postives = 111/137 (81.02%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLC+V+ VQ G KG+P++ T+D RTIRYPDPLIK NDT+K+DL   KI D+IKFD GN+ MVTGG N GRVG+I +RE+H GSF+ +H++D+ GH FATRL  +F IGK +KP++SLP+GKGIKLS+ EE  +R
Sbjct:  119 AKYKLCRVKRVQVGPKGVPFLTTHDARTIRYPDPLIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPRGKGIKLSVAEERDRR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 85/137 (62.04%), Postives = 109/137 (79.56%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG++ NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 85/137 (62.04%), Postives = 110/137 (80.29%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++ EE  KR
Sbjct:  119 AKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.236e-48
Identity = 84/137 (61.31%), Postives = 110/137 (80.29%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L++ EE  KR
Sbjct:  119 AKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.814e-48
Identity = 88/137 (64.23%), Postives = 111/137 (81.02%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKV+ V  G K +PY+ T+DGRTIRYPDPLIK ND+I+LD+   KI DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKG+K ++SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 4.981e-48
Identity = 85/137 (62.04%), Postives = 108/137 (78.83%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV  G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 84/137 (61.31%), Postives = 109/137 (79.56%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++  E  KR
Sbjct:  119 AKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 84/137 (61.31%), Postives = 109/137 (79.56%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++  E  KR
Sbjct:  119 AKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255
The following BLAST results are available for this feature:
BLAST of EY728426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RS4_LYSTE3.449e-4965.6940S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4Y1_PONPY3.449e-4962.7740S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4_IXOSC5.884e-4962.0440S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]
RS4Y2_PANTR1.311e-4862.0440S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4Y1_HUMAN1.311e-4862.0440S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO2.236e-4861.3140S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4_BOMMO3.814e-4864.2340S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4Y2_HUMAN4.981e-4862.0440S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4Y1_PANTR6.505e-4861.3140S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA6.505e-4861.3140S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-E11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728426 ID=EY728426; Name=EY728426; organism=Citrus sinensis; type=EST; length=697bp
CCACGCGTCCGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTT
GGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCG
CTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAG
AAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTC
ATGGTCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAG
GGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTG
GTCATGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATCGGGAAGGGT
TCAAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCAT
CATTGAGGAAGCTANGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTT
TTACAATGAATTTGGATGCATTTTGCTGCTTTGTTTTTTCTTGTTGAATT
AGAGCTGATTGGCACTCTCTAAAGCTGAAGTAGGACCGATGCAAAAATGA
ATCTTTATTTTTATTTTTATTTTTATCAGCACAATTTTGAACCTGCTTTG
TCCTTTTTTATTTTAGCTACTATTTGGTGGATGTGATTCATATTATCTAT
CAGNNGTCCTGTATCTCTTTATCGTNTCTGTTTGTTGGNNAAAAAAA
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