EY728425

Overview
NameEY728425
Unique NameEY728425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11729 contig Csv1_Contig11729:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.341e-27
Identity = 72/211 (34.12%), Postives = 111/211 (52.61%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEEE 753
            ++KFV DG   A ++E    +L+  GY G+E+  TPM T+I+I + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+          P   LPD   +    + EE
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRII---------QPGVVLPDSYKVRESVEVEE 203          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.588e-27
Identity = 71/210 (33.81%), Postives = 113/210 (53.81%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEE 750
            ++ FV +G+    ++E L +EL   GY G++V+VTPM T +++ A R   V+G  G+ +R +T  ++ +F      VE+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+ + KF DGY+   G+P  +++      V L+ GVLG+ V+IM          P   LPD V I  P+  E
Sbjct:    3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM---------PPDVVLPDKVEIEDPRVTE 201          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METMJ (30S ribosomal protein S3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.790e-26
Identity = 69/215 (32.09%), Postives = 115/215 (53.49%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEEEYVKP 765
            ++KF+ DGV    + + LT+EL   GY G+++  TP+ T++ I A +   V+G+ G+++R+LT  +   +      VE+  ++V N    A   AE L   L  G   R+A    +R IMESGA GCEVIV+GKL   R+++ KF +GY+   G+P    ++      + + G +G++VKI+          P   LPD   +  P+ ++   +P
Sbjct:    4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVKIV---------PPDARLPDAFDVLEPEPKKAPAEP 207          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.790e-26
Identity = 72/211 (34.12%), Postives = 110/211 (52.13%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEEE 753
            ++KFV DG   A ++E    +L   GY G+E+  TPM T+III + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+          P   LPD   +    + EE
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIRKLTRDVATKYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKVRII---------QPGVVLPDSYKVRESVEIEE 203          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.790e-26
Identity = 75/214 (35.05%), Postives = 114/214 (53.27%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEEEYVK 762
            +R FV + V    ++E   +EL++ GYS  ++R TP+ T+III A +   V+G +G RIRELT  + K F   +  +++  + V N  L A   A+ +   L  GL  RR  +  +R +M +GAKG  VI+SGKL  +RA++ KF  GYM   G+P  E +D        + GV+G+ VKIM          P   LPD + I    + +  V+
Sbjct:    3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVKIM---------RPDVLLPDEIIIKEDAEVKHVVE 205          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.643e-26
Identity = 75/222 (33.78%), Postives = 115/222 (51.80%), Query Frame = 1
Query:  124 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEEEYVKPTLGATDME 789
            +KFV  G+   EL+E L  EL   GY G+ ++  P  T+II    R    +G +GR IR +   VQ+RF      V +  +++ +  L     A  L   L  G+  RRA YG LR IM +GAKG  +I+SGKL   RA++ KF +G +   G+P +EY+       + + G +G+ V+IM          P   LPD + I  P++ E+ +K  +G ++ E
Sbjct:   12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRIM---------PPDVELPDELEIRPPEEVEDELKELIGKSEDE 223          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_THEPD (30S ribosomal protein S3P OS=Thermofilum pendens (strain Hrk 5) GN=rps3p PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.215e-26
Identity = 65/181 (35.91%), Postives = 105/181 (58.01%), Query Frame = 1
Query:  124 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 666
            RK ++ G+ +  LNE L R+L    Y   +   TP+ T++I+ A     V+G KG  I+ +  V+++ F      +++   +V N+ L A   A  +   L+ G+  RRA    L  IM +GA+G E+++SGKL +QR ++ KF  GY+  SG+P  E +D A+ HVLL+ G+ G+KV+IM
Sbjct:    6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRIM 184          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METTP (30S ribosomal protein S3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.116e-26
Identity = 76/230 (33.04%), Postives = 124/230 (53.91%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEEEYVKPTLGATDMEV-PTQVA 807
            ++KFV +G   A ++E L +EL   GY G+ +  TPM T+I + A +   V+G+ G+ IR+LT  +++RF+     +++  + V    L A   A  L   L  G   R+A   +LR +M+SGA GCE+++SGKL   R++  KF  GY+  SG+P  E +D+     + + G +G +V+I+          P   LPD   I++P  E E  +P +    +E  P+Q A
Sbjct:    4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIRKLTRDLERRFRLDNPQIDV--QDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDTGYAVAVKKLGAIGCQVRIV---------PPGAVLPDDFQINAPPKEPE-KEPVVEEAVLEAEPSQAA 221          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.116e-26
Identity = 70/209 (33.49%), Postives = 112/209 (53.59%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDE 747
            ++ FV +G+    ++E L +EL   GY G++V++TP+ T +++ A R   V+G  G+ +R +T+ ++  F      +E+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P    ++     V L+ GVLGI V+IM          P T LPD V I  PK E
Sbjct:    3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLKPGVLGIYVRIM---------PPETVLPDSVEILPPKME 200          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METLZ (30S ribosomal protein S3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps3p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.060e-25
Identity = 65/182 (35.71%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 666
            ++KFVADGV    + + L +EL   GY G+++  TP+ T++ I A +   V+G+ G+ +R+LT+ +   +      VE+  ++V N  L A   AE L   L  G   R+A   V+R +M+SGA GCEVI++GKL   RA+  KF +GY+  SG+P    ++      + + G++G++VKI+
Sbjct:    4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVRQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVMDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKLGIIGVQVKIV 183          
The following BLAST results are available for this feature:
BLAST of EY728425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS3_METAC7.341e-2734.1230S ribosomal protein S3P OS=Methanosarcina acetiv... [more]
RS3_METTH9.588e-2733.8130S ribosomal protein S3P OS=Methanobacterium ther... [more]
RS3_METMJ2.790e-2632.0930S ribosomal protein S3P OS=Methanoculleus marisn... [more]
RS3_METMA2.790e-2634.1230S ribosomal protein S3P OS=Methanosarcina mazei ... [more]
RS3_METJA2.790e-2635.0530S ribosomal protein S3P OS=Methanocaldococcus ja... [more]
RS3_METKA3.643e-2633.7830S ribosomal protein S3P OS=Methanopyrus kandleri... [more]
RS3_THEPD6.215e-2635.9130S ribosomal protein S3P OS=Thermofilum pendens (... [more]
RS3_METTP8.116e-2633.0430S ribosomal protein S3P OS=Methanosaeta thermoph... [more]
RS3_METS38.116e-2633.4930S ribosomal protein S3P OS=Methanobrevibacter sm... [more]
RS3_METLZ1.060e-2535.7130S ribosomal protein S3P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-E10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728425 ID=EY728425; Name=EY728425; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCCACCTCA
TTGAGATCATCAGATCCCTATCTCTGTAATCGAATCAACAGAAAGCAAAA
TGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGTGTTT
TTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACGGTTA
TTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATCATCC
GAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAATTAGA
GAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATAGCGT
GGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATTGCTC
AAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCGCAGG
GCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGGGATG
TGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCAATGA
AGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGAATAT
ATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTGGTAT
TAAGGTCAAGATCATGCTTAGTTGGGATCCTAATGGANAGGCAGGTCCTA
CTACCCCTCTACCTGATCTCGTAACAATCCACTCACCCAAGGATGAAGAG
GAGTATGTCAAGCCAACATTGGGTGCTACTGATATGGAGGTCCCAACCCA
AGTGGCTTAAGGCCGAAGTGGGGGGATATCTCATCTTCTTTGATATTTAT
CAATGGGATTGAAGTGCCTANTTTCATTTTGGTGGCTATGGA
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