EY728425

Overview
NameEY728425
Unique NameEY728425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.384e-25
Identity = 70/205 (34.15%), Postives = 108/205 (52.68%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHS 735
            ++KFV +G   A ++E    +L   GY G+E+  TPM T+I ++A +   ++G+ G+ IR  T  +  RFK     +++  ++V    L A   A  L   L  G   R+A    L+ IM+SGA GCEVI++GKL   R +  KF  GY+   G+PV E +D        + G++G+KV+IM          P   LPD +TI +
Sbjct:    4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVRIM---------PPEAVLPDQITIEA 197          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.384e-25
Identity = 71/215 (33.02%), Postives = 114/215 (53.02%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPK--DEEEYV 759
            ++ FV +G+    ++E L  +L   GY G++++VTP+ T +I+ A +   V+G  G+ +R +T  ++  F      VE+  ++V+   L     A  +   L  G+  RR  Y ++R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P  +Y+      V L+ GVLGI V+IM          P   LPD + I  P+  D EE V
Sbjct:    3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKPGVLGIYVRIM---------PPEVTLPDNIEISEPEIVDVEEPV 206          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METHJ (30S ribosomal protein S3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps3p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.362e-25
Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 666
            +RKFVADGV    +   L  EL   GY G+++  TP+ T++ I A +   V+G+ G+ +R LT  +   +      +E+  ++V+N  L A   AE L   L  G   R+A    LR IM+SGA GCEV++SGKL   R +  KF +GY+  SG PVN  +D      + + GV+G++V+++
Sbjct:    4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVRTLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIMDSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKLGVIGVQVRLI 183          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.362e-25
Identity = 60/182 (32.97%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 666
            +RKF+A+G   A + + LT+EL   G+ G+++  TP+ T++ I A +   V+G+ G+ + +LT  + + +      +E+  ++V N    A   AE L   L  G   R+A   ++R +M+SGA GCEV+++GKL   RA++ KF +GY+   G+P N  ++      + + GV+G++VKI+
Sbjct:    4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVKIV 183          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.028e-25
Identity = 68/210 (32.38%), Postives = 111/210 (52.86%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEE 750
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  + K +      +E+  ++V N  L        +   L  G+  RR  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +TI S + +E
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVTLPDEITILSGEIKE 201          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.172e-24
Identity = 75/240 (31.25%), Postives = 125/240 (52.08%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEEEYVKPTLGATDMEVPTQVA*GRSGGISHLL 840
            ++KFV DG   A ++E   ++L+  GY G+++  TPM T+I + A +   V+G+ G+ IR+LT  V + +      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCE+++SGKL   R++  K  +GY+  +G+PV++ +D      + + G LG KV+I+          P   LPD   +   K+ EE     LG+    V T V   +S GI  L+
Sbjct:    4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIRKLTRDVDRLYDLDNPQID--AQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKVRII---------HPDAVLPDSYRL---KNAEE-----LGSL---VSTPVEEEKSAGIEELV 221          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.531e-24
Identity = 66/203 (32.51%), Postives = 109/203 (53.69%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTI 729
            +R F+ + V    ++E L  +L   GYS ++V+ TP+ T I + A +   V+G KG+ ++ELT  +    K+  N  ++  +++ +  L A   A+ +   L  G+  RR  +  +R +M  GAKG  VIVSGKL  +R+++ K+ +GYM   G+P  E +D   +   L+ GV+G+ VKIM          P   LPD + I
Sbjct:    3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKLGVVGVTVKIM---------PPEITLPDEIVI 194          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.999e-24
Identity = 65/211 (30.81%), Postives = 114/211 (54.03%), Query Frame = 1
Query:  127 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEEEYV 759
            +F+  G+  ++++E    ELA  GY G+E+  TPM  +I+++A +   V+G+ G+ IR++T+ +++RF   +  +++  ++V    L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R +  KF  GY+  +G+P  E +D      +++ G +G+ VKI+          P   LPD   I    D E+ V
Sbjct:    6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNVKII---------PPNAELPDDFEIQEDADIEDLV 205          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.454e-24
Identity = 80/229 (34.93%), Postives = 117/229 (51.09%), Query Frame = 1
Query:  121 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEEEYV---KPTLGATDMEVPT 798
            K+ F+   +   +++E L  +    GYS VE++ TPM T +II A R+  ++G +G+ I+++T V+++ F  P   V +   KV    L A   A  L   L  G   RRA Y  LR IM +GA G +V VSGKLR +RA+  K+  G +  SG  V    D A+ HVLL+ GV G++V I    +            D V I SP++  E V   +  +  T  E PT
Sbjct:    9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVIISKKSEEERP-------DDEVRIKSPEEVNEIVQKIREEMQQTQPEAPT 228          
BLAST of EY728425 vs. ExPASy Swiss-Prot
Match: RS3_HALWD (30S ribosomal protein S3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.454e-24
Identity = 64/213 (30.05%), Postives = 117/213 (54.93%), Query Frame = 1
Query:  112 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGXAGPTTPLPDLVTIHSPKDEE 750
            ++ + +F+ +G+  ++++E    EL   GY G++V  TPM T+I+++A +   V+G+ G+ IR++T  ++ RF   +  +++  ++V+   L A   A+ L   L  G   R+A +  +  I+ESGA G E+++SGK+   R++  KF  GY+  +G+P  E +D      +++ G +G+ VKI+          P   LPD   IH   D E
Sbjct:    1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAVMKLGTIGVTVKII---------PPGAELPDDFEIHDDVDVE 202          
The following BLAST results are available for this feature:
BLAST of EY728425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS3_UNCMA1.384e-2534.1530S ribosomal protein S3P OS=Uncultured methanogen... [more]
RS3_METST1.384e-2533.0230S ribosomal protein S3P OS=Methanosphaera stadtm... [more]
RS3_METHJ2.362e-2536.8130S ribosomal protein S3P OS=Methanospirillum hung... [more]
RS3_METB62.362e-2532.9730S ribosomal protein S3P OS=Methanoregula boonei ... [more]
RS3_METM54.028e-2532.3830S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METBU1.172e-2431.2530S ribosomal protein S3P OS=Methanococcoides burt... [more]
RS3_META31.531e-2432.5130S ribosomal protein S3P OS=Methanococcus aeolicu... [more]
RS3_HALSA1.999e-2430.8130S ribosomal protein S3P OS=Halobacterium salinar... [more]
RS3_IGNH44.454e-2434.9330S ribosomal protein S3P OS=Ignicoccus hospitalis... [more]
RS3_HALWD4.454e-2430.0530S ribosomal protein S3P OS=Haloquadratum walsbyi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-E10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728425 ID=EY728425; Name=EY728425; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCCACCTCA
TTGAGATCATCAGATCCCTATCTCTGTAATCGAATCAACAGAAAGCAAAA
TGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGTGTTT
TTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACGGTTA
TTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATCATCC
GAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAATTAGA
GAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATAGCGT
GGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATTGCTC
AAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCGCAGG
GCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGGGATG
TGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCAATGA
AGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGAATAT
ATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTGGTAT
TAAGGTCAAGATCATGCTTAGTTGGGATCCTAATGGANAGGCAGGTCCTA
CTACCCCTCTACCTGATCTCGTAACAATCCACTCACCCAAGGATGAAGAG
GAGTATGTCAAGCCAACATTGGGTGCTACTGATATGGAGGTCCCAACCCA
AGTGGCTTAAGGCCGAAGTGGGGGGATATCTCATCTTCTTTGATATTTAT
CAATGGGATTGAAGTGCCTANTTTCATTTTGGTGGCTATGGA
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