EY728414

Overview
NameEY728414
Unique NameEY728414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728414 vs. ExPASy Swiss-Prot
Match: ACSL5_MOUSE (Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.569e-15
Identity = 58/199 (29.15%), Postives = 89/199 (44.72%), Query Frame = 2
Query:    8 SAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDXRGMCWFYTGDIGQVTPMDVLKLLIGRRIXVNFNMESISPLGKVEAALISSNYVEYIMIHANPLPHYCVALGGPSHKALEKWAHEATLK--FEDPSK 598
            +AP+S     F    MG  + +AYG TE   G + +   D + G VG PV C ++KL    +  Y + +     GEI + G NV  GY  +P KT EV   D     W +TGDIG+  P   LK++  ++              K+E     S  V  + +H   L  + + +  P   +L  +A +  +K  FE+  K
Sbjct:  420 AAPISTPVLTFFRAAMGCWVFEAYGQTECTGGCSITSPGDWTAGHVGTPVACNFVKLEDVADMNYFSVNN---EGEICIKGNNVFKGYLKDPEKTQEVLDKDG----WLHTGDIGRWLPNGTLKIVDRKKNIFKLAQGEYIAPEKIENVYSRSRPVLQVFVHGESLRSFLIGVVVPDPDSLPSFAAKIGVKGSFEELCK 611          
BLAST of EY728414 vs. ExPASy Swiss-Prot
Match: LCF1_SCHPO (Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe GN=lcf1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.381e-15
Identity = 59/189 (31.22%), Postives = 96/189 (50.79%), Query Frame = 2
Query:   17 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSE-----WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDXRGMCWFYTGDIGQVTPMDVLKLLIGRRIXVNFNMESISPLGKVEAALISSNYVEYIMIHANPLPHYCVALGGPSHKALEKWAHE 568
            LS D++RF++I +  P+   YGLTE  A +          DD +    G  +PC  +KLV  +EG Y +   P PRGEI + G ++T GY N   +  E +  D     WF TGD+G++TP  +L+++  ++  V         L K+E+   +S+ V  I ++A+      +A+  P+   + K A E
Sbjct:  414 LSPDTKRFLSIVL-CPMLIGYGLTEISAAAMVQNPACFNLDDSA----GSLLPCTEMKLVDCEEGNYNSHGHP-PRGEIWLRGPSLTRGYLNRDKENKESFTPDG----WFRTGDVGELTPEGLLRIIDRKKNLVKTQNGEYIALEKLESRYRTSSLVSNICVYADQTKVKPLAIIVPNEPVVRKLATE 592          
BLAST of EY728414 vs. ExPASy Swiss-Prot
Match: LCF3_YEAST (Long-chain-fatty-acid--CoA ligase 3 OS=Saccharomyces cerevisiae GN=FAA3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13
Identity = 58/187 (31.02%), Postives = 93/187 (49.73%), Query Frame = 2
Query:    2 HASAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDXRGMCWFYTGDIGQVTPMDVLKLLIGRRIXVNFNMESISPLGKVEAALISSNYVEYIMIHANPLPHYCVALGGPSHKALEKWA 562
            +  + +S D+Q+F +I +  P+   YGLTET A +   E D    G VG  V     KLV   + GY   +    +GE+++ G  V + Y+ NP +T+  +  D     WF TGDI + TP   LK++  R+  V         L K+E+   S++YV+ I ++A+      V +  P+   L K+A
Sbjct:  428 NGGSAISIDAQKFFSIVL-CPMIIGYGLTETVANACVLEPDHFEYGIVGDLVGSVTAKLVDVKDLGYYAKNN---QGELLLKGAPVCSEYYKNPIETAVSFTYDG----WFRTGDIVEWTPKGQLKIIDRRKNLVKTLNGEYIALEKLESVYRSNSYVKNICVYADESRVKPVGIVVPNPGPLSKFA 606          
BLAST of EY728414 vs. ExPASy Swiss-Prot
Match: LCF2_YEAST (Long-chain-fatty-acid--CoA ligase 2 OS=Saccharomyces cerevisiae GN=FAA2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.010e-11
Identity = 64/186 (34.41%), Postives = 92/186 (49.46%), Query Frame = 2
Query:    8 SAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDXRGMCWFYTGDI------GQVTPMDVLKLLIGRRIXVNF----NMESISPLGKVEAALISS-NYVEYIMIHANPLPHYCVALGG 532
            SAP+S D+  F+   +   I Q YGLTET AG   SE  +  VG  G        +L S  E GY  +DK + +GE+ + G  V   YF NP +TS+   VD  G  WF TGD+      G+++ +D +K         NF    + E I+P  K+E   +SS  Y+  I +  +PL  + V + G
Sbjct:  468 SAPISKDTLLFLRSALDIGIRQGYGLTETFAGVCLSEPFEKDVGSCGAIGISAECRLKSVPEMGYH-ADKDL-KGELQIRGPQVFERYFKNPNETSKA--VDQDG--WFSTGDVAFIDGKGRISVIDRVK---------NFFKLAHGEYIAP-EKIENIYLSSCPYITQIFVFGDPLKTFLVGIVG 637          
The following BLAST results are available for this feature:
BLAST of EY728414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ACSL5_MOUSE2.569e-1529.15Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculu... [more]
LCF1_SCHPO4.381e-1531.22Long-chain-fatty-acid--CoA ligase 1 OS=Schizosacch... [more]
LCF3_YEAST9.136e-1331.02Long-chain-fatty-acid--CoA ligase 3 OS=Saccharomyc... [more]
LCF2_YEAST1.010e-1134.41Long-chain-fatty-acid--CoA ligase 2 OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-D08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728414 ID=EY728414; Name=EY728414; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGCTCCTTTATCTGCGGATTCCCAGCGGTTTATTAACATTT
GCATGGGGGCTCCAATAGGTCAAGCCTATGGCTTGACAGAAACTTGTGCC
GGATCTACATTTTCTGAGTGGGACGACCCATCTGTGGGCCGTGTGGGCCC
CCCTGTTCCTTGTTGCTACATTAAGCTTGTTTCCTGGGATGAAGGAGGAT
ATAAGACTTCTGACAAACCAATGCCTCGGGGAGAGATTGTTGTAGGTGGA
TTCAATGTGACAGCTGGTTACTTTAACAATCCAGGAAAAACTAGTGAGGT
GTACAAGGTTGATGANAGGGGTATGTGCTGGTTTTATACTGGTGACATTG
GACAAGTTACCCCGATGGATGTCTTGAAATTATTGATAGGAAGAAGGATA
TTNGTCAACTTCAACATGGAGAGTATATCTCCCTTGGGAAAGGTTGAGGC
AGCACTCATTTCAAGCAACTATGTTGAATATATCATGATACATGCAAATC
CCCTTCCACACTACTGTGTTGCCCTTGGTGGTCCATCACATAAAGCCTTG
GAGAAATGGGCCCATGAAGCTACCCTCAAGTTCGAAGATCCTTCGAAGTT
GTGTTACAAACCCTAAGGCTGTCATGAGGTTCACAAGCCCCTTCCCAGGG
ACGCAAAGCTGCAAAACTCAACAGTTGGAAATTCCCGCAAAAATTAAGTT
GATCCCAAACCCGTGAAACCCGAGGGTGGATGGGTCCCGCTGCCTTGAGA
ATAAAGAGGAACACCCGGGGCGANGTTCAGGGTAACCCCCAATGTTGTGT
CGCTAATGAATGGGGCATTGCCGTTGT
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