EY728374

Overview
NameEY728374
Unique NameEY728374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728374 vs. ExPASy Swiss-Prot
Match: LEU1_STRAW (2-isopropylmalate synthase OS=Streptomyces avermitilis GN=leuA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.414e-55
Identity = 106/171 (61.99%), Postives = 126/171 (73.68%), Query Frame = 1
Query:    1 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAV----------WEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSRAIQRVTDETGREVTADDVHTIFNREYLEQKTRGSW 483
            LVTL +NL++QGV P +DFS+IDEVRR AEYCNQ+ VH RHPY GDLV+T+FSGSHQDAIKKGF   + DA           W VPYLPIDP D+GRSY+AVIRVNSQSGKGG++Y+L+ +H L LPRR+QIEFS+ IQ  TD  G EVT  D+  +F  EYL    R  W
Sbjct:  292 LVTLGMNLFSQGVDPQIDFSNIDEVRRTAEYCNQMEVHARHPYVGDLVYTSFSGSHQDAIKKGFDAMEADAAAKGVTVDDIEWAVPYLPIDPKDVGRSYEAVIRVNSQSGKGGIAYVLKNDHKLDLPRRMQIEFSKIIQTKTDAEGGEVTPKDIWAVFQDEYL-PNPRNPW 461          
BLAST of EY728374 vs. ExPASy Swiss-Prot
Match: LEU1_ARTCA (2-isopropylmalate synthase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=leuA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.414e-55
Identity = 111/172 (64.53%), Postives = 123/172 (71.51%), Query Frame = 1
Query:    1 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAV----------WEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSRAIQRVTDETGREVTADDVHTIFNREYLEQ-KTRGSW 483
            LVTL LNL+ QG+ P +DFSDID+VRR  EYCNQLPV  R PY GDLVFTAFSGSHQDAIKKGF   + DA           W+VPYLP+DP DLGRSY+AVIRVNSQSGKGGV+YLL+ EH L LPRR QIEFS  IQR TD  G EV+   +  IF  EYL   K  G W
Sbjct:  292 LVTLGLNLFVQGIDPMIDFSDIDDVRRTVEYCNQLPVPERSPYGGDLVFTAFSGSHQDAIKKGFEALERDAAAAGKDVADVTWQVPYLPVDPKDLGRSYEAVIRVNSQSGKGGVAYLLKNEHSLDLPRRAQIEFSGVIQRRTDTVGGEVSGAQLWQIFQDEYLPSGKADGQW 463          
BLAST of EY728374 vs. ExPASy Swiss-Prot
Match: LEU1_CORGB (2-isopropylmalate synthase OS=Corynebacterium glutamicum (strain R) GN=leuA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 9.747e-55
Identity = 101/172 (58.72%), Postives = 121/172 (70.35%), Query Frame = 1
Query:    1 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGF----ALQQP-------------DAVWEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSRAIQRVTDETGREVTADDVHTIFNREYLEQ 465
            LVTLALN+ TQGV P LDF+DI ++R   EYCNQL V  RHPYAGDLVFTAFSGSHQDA+ KG     A  +P             D  WEVPYLPIDP D+GR Y+AVIRVNSQSGKGGV+Y+++ +HGL +PR +Q+EFS  +Q VTD  G EV +  +  IF  EYLE+
Sbjct:  319 LVTLALNMLTQGVDPQLDFTDIRQIRSTVEYCNQLRVPERHPYAGDLVFTAFSGSHQDAVNKGLDAMAAKVKPGANSTDVSWEELRDTEWEVPYLPIDPKDVGRDYEAVIRVNSQSGKGGVAYIMKTDHGLQIPRSMQVEFSAVVQNVTDAEGGEVNSKAMWDIFATEYLER 490          

HSP 2 Score: 38.1206 bits (87), Expect = 9.747e-55
Identity = 24/75 (32.00%), Postives = 39/75 (52.00%), Query Frame = 3
Query:  537 IEAELEYNGERRIVTGKGDGAISAFGGALD---VPVRIME*HEHAHLTGGETVPXSMWEWASAIXARAXGWGLTG 752
            I AEL +NG+   V G G+G ++A+  AL+   + V I E ++HA  T G+    + +  A     +  G G+ G
Sbjct:  513 ITAELIHNGKDVTVDGHGNGPLAAYANALEKLGIDVEIQEYNQHAR-TSGDDAEAAAYVLAEVNGRKVWGVGIAG 586          
BLAST of EY728374 vs. ExPASy Swiss-Prot
Match: LEU1_RHORT (2-isopropylmalate synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=leuA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.435e-54
Identity = 99/155 (63.87%), Postives = 128/155 (82.58%), Query Frame = 1
Query:    1 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGF-ALQQPDA-VWEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSRAIQRVTDETGREVTADDVHTIFNREYL 459
            LVTL +N++TQG+ PG+DFS+ID +R  AE CN+LPVHPRHPYAGDLVFTAFSGSHQDAI KG  A+++ +  VWEVPYLPIDP D+GRSY+AVIRVNSQSGKGGV+++LE+++G+ +PR LQ+EFS+ +Q +TD TG E+T+  +   F   YL
Sbjct:  284 LVTLGMNMFTQGIDPGIDFSNIDHIREIAEECNRLPVHPRHPYAGDLVFTAFSGSHQDAINKGLHAMEKTNQDVWEVPYLPIDPKDIGRSYEAVIRVNSQSGKGGVAHILERDYGIRMPRGLQVEFSKVVQAITDTTGEEITSRGLWKTFEETYL 438          
BLAST of EY728374 vs. ExPASy Swiss-Prot
Match: LEU1_KOCRD (2-isopropylmalate synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=leuA PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.448e-54
Identity = 107/166 (64.46%), Postives = 124/166 (74.70%), Query Frame = 1
Query:    1 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAV----------WEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSRAIQRVTDETGREVTADDVHTIFNREYLEQK 468
            LVTL LNL TQGV P +DFSDI+E+RR  EYCNQLPV  R PY GDLVFTAFSGSHQDAIKKGF   + DA           W VPYLPIDP D+GRSY+AVIRVNSQSGKGGV+YLL+ E+G+ LPRR QIEFS  +Q+ T+ +G EV+A  + TIF  EYL  +
Sbjct:  292 LVTLGLNLLTQGVDPQIDFSDIEEIRRTVEYCNQLPVPERSPYGGDLVFTAFSGSHQDAIKKGFEAMERDAEQQGVGVDELEWAVPYLPIDPKDVGRSYEAVIRVNSQSGKGGVAYLLKSEYGIDLPRRAQIEFSGVVQKFTETSGSEVSAQQLWTIFRDEYLPSR 457          
BLAST of EY728374 vs. ExPASy Swiss-Prot
Match: LEU1_ARTS2 (2-isopropylmalate synthase OS=Arthrobacter sp. (strain FB24) GN=leuA PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.448e-54
Identity = 109/172 (63.37%), Postives = 123/172 (71.51%), Query Frame = 1
Query:    1 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAV----------WEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSRAIQRVTDETGREVTADDVHTIFNREYL-EQKTRGSW 483
            LVTL LN++ QG+ P +DFSDID+VRR  EYCNQLPV  R PY GDLVFTAFSGSHQDAIKKGF   + DA           W+VPYLP+DP DLGRSY+AVIRVNSQSGKGGV+YLL+ EH L LPRR QIEFS  IQ+ TD  G EV+   +  IF  EYL   K  G W
Sbjct:  292 LVTLGLNMFVQGIDPMIDFSDIDDVRRTVEYCNQLPVAERSPYGGDLVFTAFSGSHQDAIKKGFEALEKDAAAAGKDVADYTWQVPYLPVDPKDLGRSYEAVIRVNSQSGKGGVAYLLKNEHSLDLPRRAQIEFSGVIQKRTDTVGGEVSGAQLWQIFQDEYLPSSKEDGQW 463          
BLAST of EY728374 vs. ExPASy Swiss-Prot
Match: LEU1_ARTAT (2-isopropylmalate synthase OS=Arthrobacter aurescens (strain TC1) GN=leuA PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.448e-54
Identity = 109/163 (66.87%), Postives = 120/163 (73.62%), Query Frame = 1
Query:    1 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAV----------WEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSRAIQRVTDETGREVTADDVHTIFNREYL 459
            LVTL LN++ QGV P +DFSDIDE+RR  EYCNQLPV  R PY GDLVFTAFSGSHQDAIKKGF   + DA           W+VPYLPIDP DLGRSY+AVIRVNSQSGKGGV+YLL+ EH L LPRR QIEFS  IQR TD  G EV+   +  IF  EYL
Sbjct:  292 LVTLGLNMFVQGVDPMIDFSDIDEIRRTVEYCNQLPVPERSPYGGDLVFTAFSGSHQDAIKKGFEALEKDAAAAGKSVDDFTWQVPYLPIDPKDLGRSYEAVIRVNSQSGKGGVAYLLKNEHNLDLPRRAQIEFSGVIQRRTDAVGGEVSGAQLWQIFQDEYL 454          
BLAST of EY728374 vs. ExPASy Swiss-Prot
Match: LEU1_RENSM (2-isopropylmalate synthase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=leuA PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.197e-54
Identity = 109/163 (66.87%), Postives = 120/163 (73.62%), Query Frame = 1
Query:    1 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDA----------VWEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSRAIQRVTDETGREVTADDVHTIFNREYL 459
            LVTL LN+++QGV P +DFSDIDE+RR  EYCNQLP   R PY GDLVFTAFSGSHQDAIKKGF   + DA          VW VPYLP+DP DLGRSY+AVIRVNSQSGKGGV+YLL+ EH L LPRR QIEFS  IQR TD  G EV+AD     F  EYL
Sbjct:  292 LVTLGLNMFSQGVDPMIDFSDIDEIRRTVEYCNQLPAPERMPYGGDLVFTAFSGSHQDAIKKGFEALERDADAAGIAVADTVWAVPYLPVDPKDLGRSYEAVIRVNSQSGKGGVAYLLKSEHSLDLPRRAQIEFSGVIQRRTDSVGGEVSADQRWEAFTDEYL 454          
BLAST of EY728374 vs. ExPASy Swiss-Prot
Match: LEU1_LEIXX (2-isopropylmalate synthase OS=Leifsonia xyli subsp. xyli GN=leuA PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.535e-53
Identity = 105/174 (60.34%), Postives = 127/174 (72.99%), Query Frame = 1
Query:    1 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGF----------ALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSRAIQRVTDETGREVTADDVHTIFNREYL---EQKTRGSW 483
            LVTL +NL+TQG+ P +DFSDID ++R  E+CNQLPV  R P+ GDLVFTAFSGSHQDAIKKGF          ++   D VW VPYLPIDP DLGRSY+AVIRVNSQSGKGGV+YLL+ +H L LPR+LQIEFS  +Q  TD  G EVT++++  IF  EYL   E ++   W
Sbjct:  292 LVTLGVNLFTQGIDPQIDFSDIDHIKRTVEHCNQLPVGERSPWGGDLVFTAFSGSHQDAIKKGFEAMAARAQRESVDVDDLVWAVPYLPIDPKDLGRSYEAVIRVNSQSGKGGVAYLLKSDHALDLPRKLQIEFSGVVQAKTDAEGGEVTSNEIWAIFQDEYLPAPETESDAKW 465          
BLAST of EY728374 vs. ExPASy Swiss-Prot
Match: LEU1_THEFY (2-isopropylmalate synthase OS=Thermobifida fusca (strain YX) GN=leuA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.028e-52
Identity = 103/196 (52.55%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAV----------WEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSRAIQRVTDETGREVTADDVHTIFNREYL------------EQKTRGSWCATASTAIRRRVK 522
            LVTL LNL++QG+ P +DFS+IDE+RR  E+C QLPV+PRHPY GDLV+TAFSGSHQDAIKKGF   + DA           W +PYLPIDP D+GR+Y+AVIRVNSQSGKGGVSY+L++++ + LPRRLQIEFSR +Q+  D  G E + + +  IF   YL            E    G +C +A   +R  ++
Sbjct:  291 LVTLGLNLFSQGIDPMIDFSNIDEIRRTVEHCTQLPVNPRHPYGGDLVYTAFSGSHQDAIKKGFHALEADAAAAGVPVDEYRWNMPYLPIDPKDVGRTYEAVIRVNSQSGKGGVSYVLQRDYSIDLPRRLQIEFSRVVQQFADAEGGEFSGERIWEIFTDTYLSEGVVGVMAYRSETSEDGEYCISADVRLRGEIR 486          
The following BLAST results are available for this feature:
BLAST of EY728374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
LEU1_STRAW8.414e-5561.992-isopropylmalate synthase OS=Streptomyces avermit... [more]
LEU1_ARTCA8.414e-5564.532-isopropylmalate synthase OS=Arthrobacter chlorop... [more]
LEU1_CORGB9.747e-5558.722-isopropylmalate synthase OS=Corynebacterium glut... [more]
LEU1_RHORT1.435e-5463.872-isopropylmalate synthase OS=Rhodospirillum rubru... [more]
LEU1_KOCRD2.448e-5464.462-isopropylmalate synthase OS=Kocuria rhizophila (... [more]
LEU1_ARTS22.448e-5463.372-isopropylmalate synthase OS=Arthrobacter sp. (st... [more]
LEU1_ARTAT2.448e-5466.872-isopropylmalate synthase OS=Arthrobacter auresce... [more]
LEU1_RENSM3.197e-5466.872-isopropylmalate synthase OS=Renibacterium salmon... [more]
LEU1_LEIXX3.535e-5360.342-isopropylmalate synthase OS=Leifsonia xyli subsp... [more]
LEU1_THEFY1.028e-5252.552-isopropylmalate synthase OS=Thermobifida fusca (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-H07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728374 ID=EY728374; Name=EY728374; organism=Citrus sinensis; type=EST; length=899bp
CTGGTCACGCTGGCCTTGAACCTCTACACCCAGGGCGTGCACCCGGGCCT
GGACTTCTCGGACATCGATGAAGTGCGCCGCTGCGCCGAGTACTGCAACC
AGTTGCCCGTGCACCCGCGCCACCCGTACGCCGGCGACCTGGTCTTCACG
GCCTTCTCCGGTTCGCATCAGGACGCCATCAAGAAGGGCTTTGCCCTGCA
ACAGCCCGACGCCGTCTGGGAAGTGCCGTACCTGCCGATCGACCCGGCCG
ACCTCGGCCGCAGCTACGACGCCGTGATCCGCGTCAACAGCCAATCGGGC
AAGGGCGGCGTGTCGTACCTGCTCGAACAGGAGCACGGCCTGGTGTTGCC
GCGCCGCCTGCAGATCGAATTCAGCCGCGCCATCCAGCGCGTCACCGACG
AGACCGGCCGCGAAGTCACGGCCGACGACGTGCACACCATCTTCAACCGC
GAATACCTGGAACAGAAGACCCGTGGAAGCTGGTGCGCCACCGCATCGAC
GGCAATCCGTCGGCGGGTGAAGGCCANCACTTCANCATCGAGGCCGAACT
CGAATACAACGGCGAACGCCGCATCGTGACGGGCAAGGGCGACGGCGCCA
TCTCGGCCTTCGGGGGCGCGCTGGACGTGCCGGTGCGCATCATGGAATAG
CACGAGCACGCCCATCTGACGGGAGGCGAAACCGTGCCGNCTTCTATGTG
GGAATGGGCGTCNGCNATTCNAGCACGGGCTTGNGGGTGGGGCTTAACCG
GGGAATCGTGANNNNNNCNTNAAANANNTNCNTAACNCNGAGACNCGNAG
GTNATGGGCGGGACGGGGGGNGCGGACGAGGAGGTGGNGGGTGGGGGGAG
CCGGCGCGGGGCGCGGGGGGGTGGGGGCCTTGGTTGTGTCGTTTGTGGT
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