EY728364

Overview
NameEY728364
Unique NameEY728364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728364 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 52/180 (28.89%), Postives = 78/180 (43.33%), Query Frame = 2
Query:  173 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGX*WLSQYIKXK 706
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   +R  E++ EL  +L+++ L +   L+  NK D+P A +  E+    GL               ++R    ++ S     G G  EG  WLS  I  K
Sbjct:   15 KKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGL--------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180          
BLAST of EY728364 vs. ExPASy Swiss-Prot
Match: ARL14_MOUSE (ADP-ribosylation factor-like protein 14 OS=Mus musculus GN=Arl14 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 56/187 (29.95%), Postives = 86/187 (45.99%), Query Frame = 2
Query:  146 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI-GKIKFKAFDLGGHQIARRVW-XXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGX*WLSQYIK 700
            G+L S     K+A IL LGLD+AGK+TLL+ LK    +   PT     E + +   +    +D+GG +  R VW                    +R  +S++E   +L +E + N P +IL NK D+P A S +++          T   KV  + SN R   V  C  V   G  +G   L++++K
Sbjct:    2 GLLNSKNPQSKQAHILLLGLDSAGKSTLLYRLKFAETLATIPTIGFNVEMVQLQSSLTLTVWDVGGQEKMRTVWDCYCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHIKNTPVVILANKQDLPGALSAEDI----------TRMFKVKKLCSN-RNWYVQPCCAVTGEGLDDGFRKLTEFLK 177          
BLAST of EY728364 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 49/177 (27.68%), Postives = 78/177 (44.07%), Query Frame = 2
Query:  173 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGX*WLSQYI 697
            +K+ +IL +GLD AGKTT+L+ +K   +V   PT     E +    I F  +D+GG    R +W                   ER  +++ EL  ++++E L +   L+  NK D+P A S  E+   L L              + +R    F+ S     G G  EG  WL+ ++
Sbjct:   15 KKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHL--------------NTIRERNWFIQSTCATRGDGLYEGFDWLTTHL 177          
The following BLAST results are available for this feature:
BLAST of EY728364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ARF1_CATRO6.805e-1128.89ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARL14_MOUSE8.887e-1129.95ADP-ribosylation factor-like protein 14 OS=Mus mus... [more]
ARF1_PLAFA8.887e-1127.68ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-G06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728364 ID=EY728364; Name=EY728364; organism=Citrus sinensis; type=EST; length=852bp
CCACGCGTCCGATCACGCACTCGTTGATTCCTCCTAATTATCTCAAAGAT
TCATCATATTTGAGCCAAAATTCGATCTTTTTGATAGATTCATTATAAAT
AAGGAGTAATAAAAGAAACCCATGTTTTTGTTTGATTGGTTTTATGGGAT
TCTTGCATCTCTTGGGCTCTGGCAAAAAGAGGCCAAGATCTTGTTTCTCG
GCCTCGATAATGCCGGTAAAACGACGCTGCTTCATATGTTGAAAGATGAG
AGATTAGTTCAACATCAACCAACACAACATCCCACTTCGGAGGAACTGAG
TATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGAGGGCATCAGATTG
CTCGTAGAGTTTGGAAAGATTACTACGCCAAGGTTGATGCGGTTGTGTAC
CTGGTAGATGCGTATGACAAGGAGAGGTTTGCTGAGTCAAAAAGGGAGCT
TGATGCCCTGCTTTCAGATGAATCCTTGGCCAATGTTCCATTCCTAATTT
TGGGCAACAAAATTGATATCCCATATGCTGCATCAGAAGATGAGTTGCGA
TATCACCTTGGACTGACCAACTTCACCACTGGCAAGGGTAAGGTGAATCT
GGTTGATTCAAACGTTCGTCCCCTTGAGGTATTCATGTGCAGCATTGTCC
GCAAAATGGGTTACGGAGAGGGATNNTAGTGGCTGTCTCAGTACATCAAG
TANAAGCAGAAGTAGAATTTGTTCGGTTCTTTCTTTATATGTTGTTACAC
AATGAATTGAGGTGGATGCGTTTCCTTTAAAACTGGAGATCTTGTATTCT
CCCATTTCGCCTATGAATGACAACATTGCACGTCATCCTGTTACAGACTT
TA
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