EY728360

Overview
NameEY728360
Unique NameEY728360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_YERPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pseudotuberculosis GN=clpX PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.566e-53
Identity = 117/242 (48.35%), Postives = 159/242 (65.70%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVERPTTVSS--GVVWAGGDWPSPVILWRSPRQRTGGVGV 725
            PFT+ DAT LT+AGYVGED E+++ KLL   D+DV+ AQRGIVYIDE+DKI  K+++ +  RDVSGEGVQQALLK++EGT+    +P  G RKHP+ + + +DT  ILFICGGAF GL+K I +R    S IGFGA V+      G ++      LL  V   DL+ +GLIPE  GR P++ +LS L+ED L+Q+L+EP NAL ++   + S  GV     D     I  ++  ++TG  G+
Sbjct:  139 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTI--AAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVK------GQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGL 372          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_VARPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Variovorax paradoxus (strain S110) GN=clpX PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.566e-53
Identity = 110/207 (53.14%), Postives = 147/207 (71.01%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVERPT 629
            PF + DAT LT+AGYVGED E+++ KLL + +++VE AQRGIVYIDE+DKI  K+++ +  RDVSGEGVQQALLK++EGT+ +V  P  G RKHP  D + IDT +ILFICGGAF GLEK I  R + S IGFGA V++  +          + +   V   DL+ +GLIPE+ GR P++ SL+ L+ED LVQ+L EP NA+V++ T
Sbjct:  142 PFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASV--PPQGGRKHPNQDFLQIDTTNILFICGGAFAGLEKVIENRTEASGIGFGASVKSKAQRS-------ITEVFREVEPEDLIKFGLIPELVGRMPVVASLAELSEDALVQILTEPKNAVVKQFT 339          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_RHILO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium loti GN=clpX PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.566e-53
Identity = 113/207 (54.59%), Postives = 150/207 (72.46%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRA--NMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFT+ DAT LT+AGYVGED E+++ KLL +AD++VE AQRGIVYIDE+DKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT +ILFICGGAF GL+K IS+R + +SIGFGA V +  + RTG          +   V   DL+ +GLIPE  GR P+L +L  L+E  L+Q+L EP NALV++
Sbjct:  140 PFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV--PPQGGRKHPQQEFLQVDTANILFICGGAFAGLDKIISDRGRKTSIGFGATVASPEDRRTG---------DIFRQVEPEDLLKFGLIPEFVGRLPVLATLEDLDEPALIQILTEPKNALVKQ 335          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_NEIMB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Neisseria meningitidis serogroup B GN=clpX PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.566e-53
Identity = 111/205 (54.15%), Postives = 141/205 (68.78%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PF + DAT LT+AGYVGED E ++ KLL   DFDVE AQRGIVYIDE+DKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP  + I +DT +ILFICGGAF GLEK I +R +   IGFGA V +      +T       L   V   DL+ +GLIPE+ GR P++ +L  L+ED L+ +L EP NALV++
Sbjct:  139 PFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASV--PPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADIT------KLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQ 335          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_NEIMA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Neisseria meningitidis serogroup A GN=clpX PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.566e-53
Identity = 111/205 (54.15%), Postives = 141/205 (68.78%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PF + DAT LT+AGYVGED E ++ KLL   DFDVE AQRGIVYIDE+DKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP  + I +DT +ILFICGGAF GLEK I +R +   IGFGA V +      +T       L   V   DL+ +GLIPE+ GR P++ +L  L+ED L+ +L EP NALV++
Sbjct:  139 PFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASV--PPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADIT------KLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQ 335          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_MAGSA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=clpX PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.566e-53
Identity = 113/205 (55.12%), Postives = 146/205 (71.22%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFT+ DAT LT+AGYVGED E+++ KLL AA+++VE AQRGIVYIDEVDKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT +ILFICGGAF GLEK I  R + +SIGFGA VR         D   T  +L  V   DL+ +GLIPE  GR P+L +L  L+ D L+ +L +P NALV++
Sbjct:  138 PFTMADATTLTEAGYVGEDVENIILKLLQAAEYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV--PPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIGSRGRGTSIGFGADVRG-------PDERRTGEILREVEPEDLLKFGLIPEFVGRLPVLATLEDLDVDALIDILSKPKNALVKQ 333          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_COLP3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=clpX PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.566e-53
Identity = 114/210 (54.29%), Postives = 146/210 (69.52%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVERPTTV 635
            PFT+ DAT LT+AGYVGED E+++ KLL   D+DVE AQRGIVYIDE+DKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT  ILFICGGAF GL+K + +R    + IGFGA VR   +   LTD L        V   DLV YGLIPE  GR P+L +L  L+E  L+Q+L+EP NAL ++ T +
Sbjct:  140 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASV--PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVVEQRNHTGTGIGFGAEVRGKDQEISLTDRLA------DVEPQDLVKYGLIPEFIGRLPVLATLRELDEAALIQILQEPKNALTKQFTAL 341          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_PROMH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Proteus mirabilis (strain HI4320) GN=clpX PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.964e-53
Identity = 110/206 (53.40%), Postives = 145/206 (70.39%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFT+ DAT LT+AGYVGED E+++ KLL   D+DV+ AQRGIVYIDE+DKI  K+E+ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT  ILFICGGAF GL+K +++R    S IGFGA V++        +      LL  V   DL+ +GLIPE  GR P++ +L  LNED L+Q+L+EP NAL ++
Sbjct:  139 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASV--PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVVAQRLNTHSGIGFGAEVKSQ------NEKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLGELNEDALIQILQEPKNALTKQ 336          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_NEIMF (ATP-dependent Clp protease ATP-binding subunit clpX OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=clpX PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.964e-53
Identity = 111/205 (54.15%), Postives = 140/205 (68.29%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PF + DAT LT+AGYVGED E ++ KLL   DFDVE AQRGIVYIDE+DKI  K ++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP  + I +DT +ILFICGGAF GLEK I +R +   IGFGA V +      +T       L   V   DL+ +GLIPE+ GR P++ +L  L+ED L+ +L EP NALV++
Sbjct:  139 PFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASV--PPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADIT------KLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQ 335          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_NEIM0 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Neisseria meningitidis serogroup C (strain 053442) GN=clpX PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.964e-53
Identity = 111/205 (54.15%), Postives = 140/205 (68.29%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PF + DAT LT+AGYVGED E ++ KLL   DFDVE AQRGIVYIDE+DKI  K ++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP  + I +DT +ILFICGGAF GLEK I +R +   IGFGA V +      +T       L   V   DL+ +GLIPE+ GR P++ +L  L+ED L+ +L EP NALV++
Sbjct:  139 PFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASV--PPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADIT------KLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQ 335          
The following BLAST results are available for this feature:
BLAST of EY728360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_YERPS4.566e-5348.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VARPS4.566e-5353.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHILO4.566e-5354.59ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NEIMB4.566e-5354.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NEIMA4.566e-5354.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MAGSA4.566e-5355.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_COLP34.566e-5354.29ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PROMH5.964e-5353.40ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NEIMF5.964e-5354.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NEIM05.964e-5354.15ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-G01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728360 ID=EY728360; Name=EY728360; organism=Citrus sinensis; type=EST; length=894bp
CACGCGTCCGGCCATTTACCATCACTGATGCAACAGCTTTAACGCAGGCT
GGGTATGTTGGAGAAGACGCGGAATCACTATTGTACAAGTTGTTAGCGGC
TGCTGATTTCGACGTGGAAGCAGCTCAGAGAGGGATCGTCTACATTGATG
AAGTTGATAAGATAGTGAAGGCTGAGAGTCGAAACAATGGCAGAGATGTA
TCGGGCGAGGGAGTCCAACAGGCATTACTGAAAATGCTAGAAGGAACTGT
AGTAAATGTTCCTATACCTGATAACGGACCTCGGAAGCATCCTCGTGGTG
ATAACATTCCAATTGATACGAAAGATATCCTTTTCATATGTGGTGGTGCC
TTTGTTGGTTTGGAGAAGACAATTTCAGAGAGACGGCAAGATTCTTCTAT
TGGCTTTGGAGCACCAGTCCGTGCAAACATGAGAACTGGTGGATTGACTG
ATGCGCTTGTGACGTCATCATTGTTGGAATCAGTACATAGTGGTGATCTT
GTAGCATATGGCCTCATTCCTGAAGTGCGTGGACGGTGGCCGATTTTAGT
GAGCTTGTCAGCTTTAAATGAGGATCAACTCGTTCAGGTTCTCCGTGAGC
CGGGAAATGCCCTGGTGGAGAGGCCCACAACAGTTTCGAGCGGAGTAGTG
TGGGCTGGCGGCGACTGGCCATCGCCTGTGATTCTTTGGCGCAGTCCGCG
GCAGAGAACCGGGGGCGTCGGGGTCGAGAAACCGCTTGCGAGGGGTGCCT
AGCGTGGGCCCTCGTCGACATAGCGAAGGGTGCGATGCGAGGTCGAGTGC
GGGGCGGGCGGGGCGGTGGGGAAGGGCGCCGATCCGGAAGCGATAGGAGA
GCGTGCGAGAGCCGGTCGCGCGGGCGGGGGGCGTGGTGGGCCGC
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