EY728356

Overview
NameEY728356
Unique NameEY728356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3283 contig Csv1_Contig3283:331..1238. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728356 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.855e-12
Identity = 48/187 (25.67%), Postives = 84/187 (44.92%), Query Frame = 3
Query:   63 PNEALYTLIINKLAQAKSFDAIEDIMQRIKVEKLCRFSDAFFYNVIKIYGNMAGRIGKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILI 623
            PN   Y+ +I+  A+A  FD   ++   ++   +    D   YN +       GR  +A++ L +M S      V T+N +L        Y E++ ++T   +  V  +    + L+ G  + G  + A  +  EF       +V  +S L+  LC+ G V  A  L++ M  EGI  + VT+N +I
Sbjct:  407 PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIAL--DRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSII 591          

HSP 2 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 42/147 (28.57%), Postives = 67/147 (45.58%), Query Frame = 3
Query:  189 YNVIKIYGNMAGRIGKAIETLFD-MPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILIS 626
            YN +       G   K +   FD M      P   TFN +L +     L+   + ++       +E D    N LL  +C+ G ++ AF +L + P +   PNV ++ST++ G  + G  +EA  L   M   GI  D V++N L+S
Sbjct:  306 YNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLS 452          
BLAST of EY728356 vs. ExPASy Swiss-Prot
Match: PP340_ARATH (Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.953e-12
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  177 DAFFYNVIKIYGNMAGR-IGKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGL 632
            D F YN + I G   G+ + KA+E   +M    C  S+ T+ ++++    A    E  G       +G+E D      L++G C+ G L+    + DE  ++   P   T++TL+ G C+ G ++EA  + E M   G+  +  T+  LI GL
Sbjct:  176 DVFSYNTV-IRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGL 327          
BLAST of EY728356 vs. ExPASy Swiss-Prot
Match: PP164_ARATH (Pentatricopeptide repeat-containing protein At2g19280 OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.953e-12
Identity = 52/236 (22.03%), Postives = 101/236 (42.80%), Query Frame = 3
Query:   63 PNEALYTLIINKLAQAKSFDAIEDIMQRIKVEKLCRFSDAFFYNVIKIYGNMAGRIGKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQXXXXXXXXXXXXXXXXXCYPNSASYSEVLYGLLDKKRFLRRKS 770
            P+    T++I   ++  S    E + + +K E L +     + N++  YG    ++ K  E + +M S    P V T+N++++ +V      E   I +   + G          ++ G  + G+ + AF +         +P+V T S L+HG C+   +E+A  L  ++   G+  D V +N LI G                       PN +++  ++ G L+ KRF+  ++
Sbjct:  441 PSLTTSTILIGACSRFGSISDAESVFRNMKTEGL-KLDVVTYNNLMHGYGK-THQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLG-LEGKRFVNSET 673          
BLAST of EY728356 vs. ExPASy Swiss-Prot
Match: PP180_ARATH (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.169e-11
Identity = 48/207 (23.19%), Postives = 96/207 (46.38%), Query Frame = 3
Query:   27 VLNQYSKRKDYNPNEALYTLIINKLAQAKSFDA---IEDIMQRIKVEKLCRFSDAFFYNVIKIYGNMAGRIGKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRK 638
            +L    + K  N  + ++  +I+   +    D    I D+M++   +     +D F  N I    N   R  +A + LF M       S  ++  ++++        E + ++   +  GV+ +A   N+++   C+ G ++ A  +         +P+  T+++L+HG C   NV+EA  L   M  +G+D ++VT+ ++ISGL K
Sbjct:  385 ILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQ-----ADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSK 586          
BLAST of EY728356 vs. ExPASy Swiss-Prot
Match: PPR49_ARATH (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.994e-11
Identity = 52/188 (27.66%), Postives = 88/188 (46.81%), Query Frame = 3
Query:   63 PNEALYTLIINKLAQAKSFDAIEDIMQRIKVEKLCRFSDAFFYNVIKIYGNMAGRIGKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILIS 626
            P+   Y  +I+  A+A   D   D+ QR++   L    D F Y+VI      AG +  A +   +M    C P++ T+N++++L   A+ Y     +Y      G E D    +I+++ L   G LE A  V  E  ++N  P+   +  L+    + GNVE+A+   + M   G+  +  T N L+S
Sbjct:  432 PDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS--PDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLS 617          
BLAST of EY728356 vs. ExPASy Swiss-Prot
Match: PPR41_ARATH (Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana GN=At1g13630 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.994e-11
Identity = 49/187 (26.20%), Postives = 81/187 (43.32%), Query Frame = 3
Query:  177 DAFFYNVIKIYGNMAGRIGKAIETLFDMPSYNC-WPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQXXXXXXXXXXXXXXXXXCYPNSASYSEVLYG 734
            D   Y ++       G I   +  L DM S      S+   +++L+ L       E   ++      G+  D    +I++ GLC+ G  + A ++ DE   +   PN RT   L+ GLC+KG + EA  LL+ + S G   D V +NI+I G  K                    P+ A+++ ++YG
Sbjct:  340 DVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYG 526          
BLAST of EY728356 vs. ExPASy Swiss-Prot
Match: PP409_ARATH (Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.994e-11
Identity = 57/254 (22.44%), Postives = 105/254 (41.34%), Query Frame = 3
Query:   63 PNEALYTLIINKLAQAKSF--------DAIEDIMQRIKVEKL---------CRFSDAFFYNVIKIYGNMAGRIGKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQXXXXXXXXXXXXXXXXXCYPNSASYSEVLYGLLDKKRFLRRKSL 773
            PN   Y L+++ L  +K F        + IE   ++ +V+           C +    F  ++K Y  + G + +      ++       SV T N +LN L+   L  +   +Y+   ++G+  +    NIL    C + N       L++  ++  EP++ T++TL+   C +G ++EAF L + M    +  D VT+  LI GL K                    P+  SY+ ++Y    +    + K L
Sbjct:  111 PNVGNYCLLLHILVSSKKFPLAMQFLCELIELTSKKEEVDVFRVLVSATDECNWDPVVFDMLVKGYLKL-GLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKL 363          
BLAST of EY728356 vs. ExPASy Swiss-Prot
Match: PP404_ARATH (Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.994e-11
Identity = 42/151 (27.81%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  189 YNVIKIYGNMAGRIGKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ 641
            ++ + IY   AG I  +I     + S    P ++   ++LN LV  +L   +  I+    KLGV  +    N+L+    ++G+ E A  +L E  ++   P++ T++TL+   C+K    EA  + +RME  G+  + VT+N  I G  ++
Sbjct:  136 FSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSRE 286          

HSP 2 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 47/190 (24.74%), Postives = 88/190 (46.32%), Query Frame = 3
Query:   63 PNEALYTLIINKLAQAKSFDAIEDIMQRIKVEKLCRFSDAFFYNVIKIYGNMAGRIGKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGL 632
            P+    T+++N L + +  D +  I +  K+ KL   ++   YNV+    + +G   KA + L +M     +P + T+N ++++     ++ E   +     + GV  +    N  + G    G +  A  +  E  K +   N  T++TL+ G C   +++EA  L E MES G     VT+N ++  L
Sbjct:  166 PHLQACTVLLNSLVKQRLTDTVWKIFK--KMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREI-KDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKL 352          
BLAST of EY728356 vs. ExPASy Swiss-Prot
Match: PPR40_ARATH (Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.605e-11
Identity = 52/201 (25.87%), Postives = 89/201 (44.28%), Query Frame = 3
Query:   48 RKDYNPNEALYTLIINKLAQAKSFD-AIEDIMQRIKVEKLCRFSDAFFYNVIKIYGNMAGRIGKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAA--FYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ 641
            R   +P+      ++  L  A+  D A E + + IK  ++        YN +      AGRI KA      M    C P + T+N++LN      +    +G+     + G+++DA   N LLK  C   + +    F V +  P+  C+  V ++STL+   C   N  +A+ L E M  +G+  + VT+  LI    ++
Sbjct:  177 RSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKL--STVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCD--VVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLRE 373          
BLAST of EY728356 vs. ExPASy Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.605e-11
Identity = 48/190 (25.26%), Postives = 86/190 (45.26%), Query Frame = 3
Query:   63 PNEALYTLIINKLAQ-AKSFDAIEDIMQRIKVEKLCRFSDAFFYNVIKIYGNMAGRIGKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTFSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISG 629
            PN+ L T +IN+  +  K  +A       +    L    DA  Y V+        ++  A E   +M      P V ++ +++N         +   I+    + G+  +    N+LL G C +G +E A  +LDE   +   PN  T+ T++ G C+ G++ EAF L + M+ +G+  D+  +  L+ G
Sbjct:  555 PNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGIL---GDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741          
The following BLAST results are available for this feature:
BLAST of EY728356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
PP178_ARATH6.855e-1225.67Pentatricopeptide repeat-containing protein At2g31... [more]
PP340_ARATH8.953e-1228.76Pentatricopeptide repeat-containing protein At4g28... [more]
PP164_ARATH8.953e-1222.03Pentatricopeptide repeat-containing protein At2g19... [more]
PP180_ARATH1.169e-1123.19Pentatricopeptide repeat-containing protein At2g32... [more]
PPR49_ARATH1.994e-1127.66Pentatricopeptide repeat-containing protein At1g18... [more]
PPR41_ARATH1.994e-1126.20Putative pentatricopeptide repeat-containing prote... [more]
PP409_ARATH1.994e-1122.44Pentatricopeptide repeat-containing protein At5g40... [more]
PP404_ARATH1.994e-1127.81Pentatricopeptide repeat-containing protein At5g38... [more]
PPR40_ARATH2.605e-1125.87Pentatricopeptide repeat-containing protein At1g13... [more]
PP442_ARATH2.605e-1125.26Pentatricopeptide repeat-containing protein At5g61... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-F07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728356 ID=EY728356; Name=EY728356; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGCGGACGCGTGGGTCAGTTTTGAATCAATACTCCAAGAGA
AAAGACTACAATCCGAATGAAGCTCTTTACACTCTTATCATCAACAAGCT
TGCTCAAGCCAAAAGCTTCGATGCCATTGAAGACATAATGCAAAGAATAA
AAGTTGAAAAACTGTGTCGTTTTTCAGATGCATTTTTTTACAATGTGATC
AAGATTTATGGAAATATGGCTGGGAGAATTGGCAAAGCAATTGAGACCCT
TTTTGATATGCCAAGTTATAATTGTTGGCCGAGTGTCAAAACGTTCAATT
TGGTGCTCAATTTGCTTGTTTCGGCCAAACTGTATGGTGAGATACAGGGG
ATTTACACTAGTGCTGCTAAGCTTGGAGTTGAGATTGATGCTTGTTGTCT
TAACATTCTTCTTAAAGGGTTGTGTGAAAATGGGAATTTGGAGGCTGCAT
TCTACGTGCTCGATGAATTTCCTAAACAAAATTGTGAGCCCAATGTGAGG
ACGTTTTCGACGTTGATGCATGGTTTGTGTGAGAAGGGTAATGTGGAGGA
AGCATTTGGGTTGCTTGAGAGGATGGAAAGTGAGGGAATTGATGCCGATA
CGGTAACGTTTAATATATTGATTTCGGGCCTTAGGAAGCAAGGCAAGGTT
GANGAGGGAATGAAGCTTTTGGAGAAGATGAAGGGTAAAGGGTGTTATCC
AAATTCAGCGTCTTATTCAGAGGTTTTGTATGGTTTGCTTGATAAGAAGA
GGTTCCTGAGGCGAAAGAGCCTGTAGGTAGGATGATTTGTGAGCGTATGA
GTCCTANTTTTGTGTCCTACAAAAAGTTGATCCTGGACTTGGTATCCAAA
ACTGGTTGAGGATGTGGATTGGGTATTAAAAAAAATGTNCACCACGGTTT
GTCCCGAG
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